View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_403 (Length: 249)
Name: NF10145A_low_403
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_403 |
 | |
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| [»] scaffold0214 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 11894346 - 11894115
Alignment:
| Q |
1 |
ggcaaacttacctctttcaattttcagggtgtttgtgtcgaccttgatggggcggccaagagcagaagccatggctagcaagaaactctcatcatagtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11894346 |
ggcaaacttacctctttcaattttcagggtgtttgtgtcgaccttgatggggcggccaagagcagaagccatggctagcaagaaactctcatcatagtat |
11894247 |
T |
|
| Q |
101 |
actaagttcagacttgggaatctcacccaaacagttgttttgtcaactttggcgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagt |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11894246 |
actaagttcagacctgggaatctcacccaaacaattgttttgtcaactttggagtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagt |
11894147 |
T |
|
| Q |
201 |
gatcaaatattaaccaaggacctcccgtgatg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
11894146 |
gatcaaatattaaccaaggacctcccgtgatg |
11894115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 8310663 - 8310877
Alignment:
| Q |
16 |
ttcaattttcagggtgtttgtgtcgaccttgatggggcggccaagagcagaagccatggctagcaagaaactctcatcatagtatactaagttcagactt |
115 |
Q |
| |
|
|||||||||||| ||||||| || | ||| |||||||||||||||||||||||||| |||| | || ||||| |||||||| |||| |||||| | | |
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|
| T |
8310663 |
ttcaattttcag--tgtttgtatcaatcttaatggggcggccaagagcagaagccatagctaagagaaagctctcgtcatagtaaactaggttcagccct |
8310760 |
T |
|
| Q |
116 |
gggaatctcacccaaacagttgttttgtcaactttggcgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaatattaacc |
215 |
Q |
| |
|
|| |||||||| |||| |||||||||| || || || ||||||||||||||||| || ||||||||||||||||| || || || ||||||||| |
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|
| T |
8310761 |
ggaaatctcactgaaacgattgttttgtccaccttagcatttggagatgcaaattctggcattcagtgtgtgactgcaagacaatggtcgaatattaact |
8310860 |
T |
|
| Q |
216 |
aaggacctcccgtgatg |
232 |
Q |
| |
|
|||| ||||| |||||| |
|
|
| T |
8310861 |
aagggcctccggtgatg |
8310877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 23421576 - 23421449
Alignment:
| Q |
2 |
gcaaacttacctctttcaattttcagggtgtttgtgtcgaccttgatggggcggccaagagcagaagccatggctagcaagaaactctcatcatagtata |
101 |
Q |
| |
|
||||| || |||||||||| |||||| |||||||||||||| ||||| || | || | ||||||||||| |||| | ||| || ||||||||||||| |
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|
| T |
23421576 |
gcaaattttcctctttcaactttcagtgtgtttgtgtcgactttgattggtcttccgatcgcagaagccattgctaaaaggaagctttcatcatagtata |
23421477 |
T |
|
| Q |
102 |
ctaagttcagacttgggaatctcaccca |
129 |
Q |
| |
|
| | |||||||| ||||||||| ||||| |
|
|
| T |
23421476 |
caaggttcagacctgggaatctgaccca |
23421449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 38650155 - 38650210
Alignment:
| Q |
2 |
gcaaacttacctctttcaattttcagggtgtttgtgtcgaccttgatggggcggcc |
57 |
Q |
| |
|
||||| || |||||||||| |||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
38650155 |
gcaaattttcctctttcaactttcagagtgtttgtgtcgactttgattgggcggcc |
38650210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 15479787 - 15479869
Alignment:
| Q |
146 |
actttggcgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaatattaaccaaggacctcccgt |
228 |
Q |
| |
|
|||||||| |||||||| ||||| || | ||||| |||||||||||||| || || || | |||||||||||||||||||| |
|
|
| T |
15479787 |
actttggcatttggagaggcaaactcgagggaccaatgtgtgactgcaagacaatggtcgtaaattaaccaaggacctcccgt |
15479869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 20282047 - 20281816
Alignment:
| Q |
1 |
ggcaaacttacctctttcaattttcagggtgtttgtgtcgaccttgatggggcggccaagagcagaagccatggctagcaagaaactctcatcatagtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20282047 |
ggcaaacttacctctttcaattttcagggtgtttgtgtcgaccttgatggggcggccaagagcagaagccatggctagcaagaaactctcatcatagtat |
20281948 |
T |
|
| Q |
101 |
actaagttcagacttgggaatctcacccaaacagttgttttgtcaactttggcgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagt |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20281947 |
actaagttcagacctgggaatctcacccaaacaattgttttgtcaactttggtgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagt |
20281848 |
T |
|
| Q |
201 |
gatcaaatattaaccaaggacctcccgtgatg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
20281847 |
gatcaaatattaaccaaggacctcccgtgatg |
20281816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 23135534 - 23135765
Alignment:
| Q |
1 |
ggcaaacttacctctttcaattttcagggtgtttgtgtcgaccttgatggggcggccaagagcagaagccatggctagcaagaaactctcatcatagtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23135534 |
ggcaaacttacctctttcaattttcagggtgtttgtgtcgaccttgatggggcggccaagagcagaagccattgctagcaagaaactctcatcatagtat |
23135633 |
T |
|
| Q |
101 |
actaagttcagacttgggaatctcacccaaacagttgttttgtcaactttggcgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagt |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23135634 |
actaagttcagacctgggaatctcacccaaacaattgttttgtcaactttggtgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagt |
23135733 |
T |
|
| Q |
201 |
gatcaaatattaaccaaggacctcccgtgatg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23135734 |
gatcaaatattaaccaaggacctcccgtgatg |
23135765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 14656633 - 14656857
Alignment:
| Q |
8 |
ttacctctttcaattttcagggtgtttgtgtcgaccttgatggggcggccaagagcagaagccatggctagcaagaaactctcatcatagtatactaagt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |
|
|
| T |
14656633 |
ttacctctttcaattttcagggtgtttgtgtcaactttgatggggcggccaagagcagaagccatagctaacaagaaactctcatcatagtacactaagt |
14656732 |
T |
|
| Q |
108 |
tcagacttgggaatctcacccaaacagttgttttgtcaactttggcgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaa |
207 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||||||||| ||||| || || ||||||||||||||||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
14656733 |
tcagacctgggaatctaacccaaacaattgttttgtccactttagcattcggagatgcaaattcaggcgaccagtgggtgactgtgaggcagtgatcaaa |
14656832 |
T |
|
| Q |
208 |
tattaaccaaggacctcccgtgatg |
232 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
14656833 |
gattaaccaagggcctcccgtgatg |
14656857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 1027170 - 1026946
Alignment:
| Q |
8 |
ttacctctttcaattttcagggtgtttgtgtcgaccttgatggggcggccaagagcagaagccatggctagcaagaaactctcatcatagtatactaagt |
107 |
Q |
| |
|
||||||| |||||||||||| |||||| | || ||||| |||||||| ||||||||||||||||| |||| | || |||||||||||||| |||| || |
|
|
| T |
1027170 |
ttacctcgttcaattttcagtgtgtttctatcaaccttaatggggcgaccaagagcagaagccatagctaagagaaagctctcatcatagtaaactaggt |
1027071 |
T |
|
| Q |
108 |
tcagacttgggaatctcacccaaacagttgttttgtcaactttggcgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaa |
207 |
Q |
| |
|
||| | ||| ||||||||||||| |||||||||| || || || |||||||||||||||| || | ||||||||||||||| || || || || || |
|
|
| T |
1027070 |
tcaaccctggatatctcacccaaacgattgttttgtccaccttagcatttggagatgcaaattatggcgtccagtgtgtgactgcgagacaatggtcgaa |
1026971 |
T |
|
| Q |
208 |
tattaaccaaggacctcccgtgatg |
232 |
Q |
| |
|
|||||||||||| ||||| |||||| |
|
|
| T |
1026970 |
tattaaccaagggcctccggtgatg |
1026946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 35138201 - 35138424
Alignment:
| Q |
2 |
gcaaacttacctctttcaattttcagggtgtttgtgtcgaccttgatggggcggccaagagcagaagccatggctagcaagaaactctcatcatagtata |
101 |
Q |
| |
|
||||| ||||| | ||| |||||||| ||||||||||| || || || ||||||||||||||||| |||||||||| | ||| ||||||||||| || | |
|
|
| T |
35138201 |
gcaaatttaccacgttcgattttcagagtgtttgtgtctactttaatagggcggccaagagcagatgccatggctaataggaagctctcatcataataca |
35138300 |
T |
|
| Q |
102 |
ctaagttcagacttgggaatctcacccaaacagttgttttgtcaactttggcgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtg |
201 |
Q |
| |
|
| | || | || ||| ||||| ||||| ||| |||||||||| || ||||| |||||||| ||||||||||| | |||||||| ||||| || ||||| |
|
|
| T |
35138301 |
caagatttaaacctggaaatcttacccagacaattgttttgtctaccttggcatttggagaagcaaattcaggagtccagtgtgctactgcgagacagtg |
35138400 |
T |
|
| Q |
202 |
atcaaatattaaccaaggacctcc |
225 |
Q |
| |
|
|||||| |||||||| || ||||| |
|
|
| T |
35138401 |
atcaaagattaaccacgggcctcc |
35138424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 42406341 - 42406423
Alignment:
| Q |
146 |
actttggcgtttggagatgcaaattcaggtgaccagtgtgtgactgcaaggcagtgatcaaatattaaccaaggacctcccgt |
228 |
Q |
| |
|
|||||||| |||||||| || || || || ||||| |||||||||||||| || || || | |||||||||||||||||||| |
|
|
| T |
42406341 |
actttggcatttggagaggcgaactcgggggaccaatgtgtgactgcaagacaatggtcgtaaattaaccaaggacctcccgt |
42406423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 185
Target Start/End: Complemental strand, 6125 - 5942
Alignment:
| Q |
2 |
gcaaacttacctctttcaattttcagggtgtttgtgtcgaccttgatggggcggccaagagcagaagccatggctagcaagaaactctcatcatagtata |
101 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||||||||| ||||| || || ||||| | ||||||||||| || | | |||||| |||||||| || | |
|
|
| T |
6125 |
gcaaacttacccctttcaactttcagcgtgtttgtgtcaaccttaataggacggcctatggcagaagccattgccaaaaggaaactttcatcataataaa |
6026 |
T |
|
| Q |
102 |
ctaagttcagacttgggaatctcacccaaacagttgttttgtcaactttggcgtttggagatgcaaattcaggtgaccagtgtg |
185 |
Q |
| |
|
||||||| | | ||| || | ||||||||| ||| | |||||||| ||||| || ||||||||||| |||||||| |||| |
|
|
| T |
6025 |
ctaagtttaagcctggaaaacgtacccaaacaaccgttctttcaacttttgcgttgggtgatgcaaattccggtgaccaatgtg |
5942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 7810973 - 7810807
Alignment:
| Q |
11 |
cctctttcaattttcagggtgtttgtgtcgaccttgatggggcggccaagagcagaagccatggctagcaagaaactctcatcatagtatactaagttca |
110 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || || || ||||||||||| || |||||||| || |||| ||| ||||| || ||||| |||| |||| |
|
|
| T |
7810973 |
cctctttcaattttcagtgtgttagtgtccacttttattgggcggccaagtgctgaagccatagcaagcaggaagctctcgtcgtagtagactagattca |
7810874 |
T |
|
| Q |
111 |
gacttgggaatctcacccaaacagttgttttgtcaactttggcgtttggagatgcaaattcaggtga |
177 |
Q |
| |
|
| | | |||||||||||||| |||| || |||||||| | |||||||||||| || ||||| |
|
|
| T |
7810873 |
accctagaaatctcacccaaactattgtgcgatccactttggcatctggagatgcaaactccggtga |
7810807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 13030197 - 13030243
Alignment:
| Q |
143 |
tcaactttggcgtttggagatgcaaattcaggtgaccagtgtgtgac |
189 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
13030197 |
tcaactttggcttttggtgatgcaaattctggtgaccagtgagtgac |
13030243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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