View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_407 (Length: 249)
Name: NF10145A_low_407
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_407 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 27430260 - 27430027
Alignment:
| Q |
1 |
caccggccaaacaagattgcccttttctctcatcttcttatccatcaacatcatcatcatcagtgaaaagggaggattgcaaggaagagattgttcatcc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430260 |
caccagccaaacaagattgcccttttctctcatcttcttatccatcaacatcatcatcatcagtgaaaagggaggattgcaaggaagagattgttcatcc |
27430161 |
T |
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| Q |
101 |
tcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatgtcacactatcatcaacacttgattctcatgatcatttaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430160 |
tcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatgtcacactatcatcaacacttgattctcatgatcatttaggt |
27430061 |
T |
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| Q |
201 |
gtcaacattcctgatatcatgtatgatgatgtcc |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
27430060 |
gtcaacattcctgatatcatgtatgatgatgtcc |
27430027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 60 - 234
Target Start/End: Complemental strand, 27447478 - 27447304
Alignment:
| Q |
60 |
tcagtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatg |
159 |
Q |
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|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27447478 |
tcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggactcacttttgatgatccagaaaaggatg |
27447379 |
T |
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| Q |
160 |
tcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
234 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||||| |
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| T |
27447378 |
tcacactatcatcaacacttgattctcatgatcacttaggtgtccatatttctgatatcatgtatgatgatgtcc |
27447304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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