View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_409 (Length: 249)
Name: NF10145A_low_409
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_409 |
 | |
|
| [»] chr6 (2 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 27876563 - 27876794
Alignment:
| Q |
18 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876563 |
acatcacgtacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
27876662 |
T |
|
| Q |
118 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27876663 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
27876762 |
T |
|
| Q |
218 |
agagttctattcatccgctctgccacaccatt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
27876763 |
agagttctattcatccgctctgccacaccatt |
27876794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 8481612 - 8481784
Alignment:
| Q |
77 |
ttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttgg |
176 |
Q |
| |
|
||||| |||||||||||||| |||||| |||| || ||| |||| || ||||| || |||||||| || ||||| | |||| |||| | || ||||||| |
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|
| T |
8481612 |
ttccaaatctccatcggtgttttcaaaccaattgcagtttatggagatcgattgatcacataacatgccattttcgcagcttttgccaaaaaagacttgg |
8481711 |
T |
|
| Q |
177 |
ccattcccgctgttttcagcatagctcttgttctttctacgagagttctattcatccgctctgccacaccatt |
249 |
Q |
| |
|
||||||| |||||| || ||||| |||||||| | |||| ||||||| |||||| |||||||| | |||||| |
|
|
| T |
8481712 |
ccattcctgctgttctctgcataactcttgttttatctaggagagttttattcaatcgctctgctataccatt |
8481784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 48699675 - 48699906
Alignment:
| Q |
18 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699675 |
acatcacgtacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
48699774 |
T |
|
| Q |
118 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48699775 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
48699874 |
T |
|
| Q |
218 |
agagttctattcatccgctctgccacaccatt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
48699875 |
agagttctattcatccgctctgccacaccatt |
48699906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 42268366 - 42268135
Alignment:
| Q |
18 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
117 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268366 |
acatcacatacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
42268267 |
T |
|
| Q |
118 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42268266 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
42268167 |
T |
|
| Q |
218 |
agagttctattcatccgctctgccacaccatt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42268166 |
agagttctattcatccgctctgccacaccatt |
42268135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 30948037 - 30948268
Alignment:
| Q |
18 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
117 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
30948037 |
acatcacgtacacaggacaaccaaaaacatgcagagaagaataatctactggctttcctttccacatctccattggtgtcttcaaatcaatcgtcgttga |
30948136 |
T |
|
| Q |
118 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
30948137 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccatttccgctgttttcagcatagctcttgttctttctagg |
30948236 |
T |
|
| Q |
218 |
agagttctattcatccgctctgccacaccatt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
30948237 |
agagttctattcatccgctctgccacaccatt |
30948268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 249
Target Start/End: Complemental strand, 2001305 - 2001109
Alignment:
| Q |
53 |
gaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattacataacaggcggttttca |
152 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||| ||||| |||||| |||| || |||||||| || ||||| || || ||| |||| ||||||| |
|
|
| T |
2001305 |
gaagaataatcaggtggctttccgttccaaatctccattggtgttttcaaaccaattgcggttgatggagatcgattgatcacgtaataggcagttttca |
2001206 |
T |
|
| Q |
153 |
ccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagagttctattcatccgctctgccacaccatt |
249 |
Q |
| |
|
| |||||||||||||| ||||| |||| ||| | |||| ||| ||| ||||||||||| | || ||||||| |||||||||||||||| |||||||| |
|
|
| T |
2001205 |
cagcttctgcccagaaagacttagccactcctgttgttctcaacatggctcttgttctatataggagagttatattcatccgctctgctacaccatt |
2001109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 5821129 - 5821360
Alignment:
| Q |
18 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
117 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821129 |
acatcacatacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
5821228 |
T |
|
| Q |
118 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5821229 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
5821328 |
T |
|
| Q |
218 |
agagttctattcatccgctctgccacaccatt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5821329 |
agagttctattcatccgctctgccacaccatt |
5821360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 2815117 - 2815348
Alignment:
| Q |
18 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
117 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
2815117 |
acatcacatacacaggacaaccaaacacatgtagagaagaataatctactggctttcctttccacatctccataggagtcttcaaatcaatcaacgttga |
2815216 |
T |
|
| Q |
118 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2815217 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
2815316 |
T |
|
| Q |
218 |
agagttctattcatccgctctgccacaccatt |
249 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
2815317 |
agagttatattcatccgctctgccacaccatt |
2815348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 249
Target Start/End: Complemental strand, 42587408 - 42587183
Alignment:
| Q |
24 |
cgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtga |
123 |
Q |
| |
|
||||||||| ||| || ||||| |||| ||||||||||| ||||||||| ||||| |||||||| ||||| | |||| |||| || |||||||| || |
|
|
| T |
42587408 |
cgtacacagtacatccgaacacatgtaaggaagaataatcaggtggctttccgttccaaatctccattggtgtttacaaaccaattgcggttgatggaga |
42587309 |
T |
|
| Q |
124 |
gcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagagtt |
223 |
Q |
| |
|
||||| || || ||||||||||||||||| |||||||||||||| ||||| |||| | | |||||| ||| ||| ||||||||| | |||| ||||||| |
|
|
| T |
42587308 |
tcgattgatcacgtaacaggcggttttcacagcttctgcccagaaagacttagccactactgctgttctcaacatggctcttgttttatctaagagagtt |
42587209 |
T |
|
| Q |
224 |
ctattcatccgctctgccacaccatt |
249 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
42587208 |
ctattcatccgctctgctacaccatt |
42587183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 9441946 - 9442177
Alignment:
| Q |
18 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
117 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9441946 |
acatcacatacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcaccgttga |
9442045 |
T |
|
| Q |
118 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9442046 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
9442145 |
T |
|
| Q |
218 |
agagttctattcatccgctctgccacaccatt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
9442146 |
agagttctattcatccgctctgccacaccatt |
9442177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 249
Target Start/End: Original strand, 24596348 - 24596573
Alignment:
| Q |
24 |
cgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtga |
123 |
Q |
| |
|
||||||||| ||| || ||||| |||| ||||||||||| ||||||||| ||||| |||||||| ||||| |||||| |||| || ||||||| || |
|
|
| T |
24596348 |
cgtacacagtacatccgaacacatgtaaggaagaataatcaggtggctttccgttccaaatctccattggtgttttcaaaccaattgcggttgatgtaga |
24596447 |
T |
|
| Q |
124 |
gcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagagtt |
223 |
Q |
| |
|
||||| || || ||| ||||||||||||| |||||||||||||| ||||| |||| | |||||| ||| ||| |||||| || | | || ||||||| |
|
|
| T |
24596448 |
tcgattgatcacgtaataggcggttttcacagcttctgcccagaaagacttagccactattgctgttctcaacatggctctttttttatttaagagagtt |
24596547 |
T |
|
| Q |
224 |
ctattcatccgctctgccacaccatt |
249 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
24596548 |
ctattcatccgctctgctacaccatt |
24596573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 41720873 - 41720642
Alignment:
| Q |
18 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
117 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41720873 |
acatcacgtacacaggacaaccaaaaacatgcagagaagaataatctactggctttcctttccacatctccattggtgtcttcaaatcaatcgccgttga |
41720774 |
T |
|
| Q |
118 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41720773 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
41720674 |
T |
|
| Q |
218 |
agagttctattcatccgctctgccacaccatt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
41720673 |
agagttctattcatccgctctgccacaccatt |
41720642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 34354473 - 34354242
Alignment:
| Q |
18 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
34354473 |
acatcacgtacacaggacaaccaaacacatgtagagaagaataatctactggctttcctttccacatctccattggtgtcttcaaatcaattgtcgttga |
34354374 |
T |
|
| Q |
118 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
34354373 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcctgctgttttcagcatagctcttgttctttctagg |
34354274 |
T |
|
| Q |
218 |
agagttctattcatccgctctgccacaccatt |
249 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
34354273 |
agagttctattcatccgctctgccgcaccatt |
34354242 |
T |
|
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Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 827942 - 827711
Alignment:
| Q |
18 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827942 |
acatcacgtacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
827843 |
T |
|
| Q |
118 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
827842 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcacagaacgacttggccattcccgctgttttcagcataactcttgttctttctagg |
827743 |
T |
|
| Q |
218 |
agagttctattcatccgctctgccacaccatt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
827742 |
agagttctattcatccgctctgccacaccatt |
827711 |
T |
|
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