View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_414 (Length: 249)
Name: NF10145A_low_414
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_414 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 46366484 - 46366713
Alignment:
| Q |
20 |
catcaatagtttcattcagactagatgtgtagtagttgacacaaccaatttcagattaatggattcattttgcaatgcaagttcgnnnnnnncagaaggg |
119 |
Q |
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| T |
46366484 |
catcaatagtttcattcagacttgaggtgtagtagttgacacaatcaatttcagattaatggattcattttgcaatgcaagttcgtttttttcagaaggg |
46366583 |
T |
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| Q |
120 |
tcaaattcaatgttgagaatttttactagaatgtatgcaggctgttactgttcgtcctttatcttcagtgtgtgctcttgttcggtttgctgacgagccc |
219 |
Q |
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| T |
46366584 |
tcaaattcaatgttgagaatttttactagaatgtatgcaggctgttactgttcgtcctttatcttcagtgtgtgctcttgttcggtttgctgaagagccc |
46366683 |
T |
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| Q |
220 |
cagatgtttgcaattgagtttagtgatgga |
249 |
Q |
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| T |
46366684 |
cagatgtttgcaattgagttcagtgatgga |
46366713 |
T |
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