View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_415 (Length: 249)
Name: NF10145A_low_415
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_415 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 31576844 - 31577083
Alignment:
| Q |
1 |
tcaactaatcaagcgggtatggtggaaccgaaaggtcgttagcatgtgatcacatgctgtatttttgtcttttgagcaatgcannnnnnnnatatgaaaa |
100 |
Q |
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| T |
31576844 |
tcaactaatcaagcgggtatggtggaaccgaaaggtcgttagcatgtgatcacatgctgtatttttgtcttttgagcaatgcattttttttatatgaaaa |
31576943 |
T |
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| Q |
101 |
tgtatatgtattataccattaatcatgaattctgttttattctgtgtatggtaaggtatataaaatattatatactagaaactaaactatttctcactgt |
200 |
Q |
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| T |
31576944 |
tgtatatgtattataccattaatcatgaattctgttttattctgtgtatggtaaggtatataaaatattatatactagaaactaaactatttctcactgt |
31577043 |
T |
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| Q |
201 |
ataaggcgacgatgatactgctatttaatattatattctt |
240 |
Q |
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| T |
31577044 |
ataaggcgacgatgatactgctatttgatattattttctt |
31577083 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 28426502 - 28426563
Alignment:
| Q |
176 |
tagaaactaaactatttctcactgtataaggcgacgatgatactgctatttaatattatattctt |
240 |
Q |
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| T |
28426502 |
tagaaactaaactatttctca---tgtaaggcgatgatgatactgatatttgatattattttctt |
28426563 |
T |
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