View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_419 (Length: 249)

Name: NF10145A_low_419
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_419
NF10145A_low_419
[»] scaffold0284 (1 HSPs)
scaffold0284 (29-219)||(2254-2444)
[»] chr4 (7 HSPs)
chr4 (23-219)||(6553010-6553206)
chr4 (23-219)||(6552610-6552806)
chr4 (23-219)||(312784-312990)
chr4 (29-96)||(38932846-38932914)
chr4 (23-94)||(48828114-48828185)
chr4 (124-190)||(24181727-24181793)
chr4 (101-153)||(6561023-6561075)
[»] chr8 (3 HSPs)
chr8 (23-206)||(41528440-41528623)
chr8 (23-219)||(36754454-36754650)
chr8 (124-182)||(43216917-43216975)
[»] scaffold0114 (1 HSPs)
scaffold0114 (29-219)||(35120-35310)
[»] chr1 (7 HSPs)
chr1 (23-219)||(45919637-45919833)
chr1 (23-219)||(49880252-49880450)
chr1 (33-102)||(40872549-40872618)
chr1 (110-190)||(16853665-16853745)
chr1 (101-182)||(31088746-31088829)
chr1 (23-70)||(9890556-9890603)
chr1 (35-67)||(51849590-51849622)
[»] chr2 (7 HSPs)
chr2 (23-219)||(31967255-31967451)
chr2 (23-94)||(23077824-23077895)
chr2 (23-94)||(41746338-41746409)
chr2 (29-99)||(9470617-9470687)
chr2 (103-142)||(36727631-36727670)
chr2 (116-156)||(36720129-36720169)
chr2 (106-190)||(45054025-45054109)
[»] chr5 (2 HSPs)
chr5 (23-217)||(9023441-9023635)
chr5 (31-67)||(27769810-27769846)
[»] scaffold0211 (1 HSPs)
scaffold0211 (23-219)||(19871-20067)
[»] chr3 (6 HSPs)
chr3 (49-216)||(50239968-50240138)
chr3 (21-87)||(43838652-43838718)
chr3 (23-100)||(7672538-7672615)
chr3 (23-67)||(30006165-30006209)
chr3 (124-191)||(14249223-14249290)
chr3 (124-190)||(6437626-6437692)
[»] chr6 (6 HSPs)
chr6 (23-102)||(6525043-6525122)
chr6 (23-92)||(21237362-21237431)
chr6 (35-66)||(12291667-12291698)
chr6 (111-190)||(18089942-18090021)
chr6 (109-190)||(26595897-26595978)
chr6 (101-189)||(31737166-31737254)
[»] scaffold0191 (1 HSPs)
scaffold0191 (124-190)||(11645-11711)
[»] scaffold0216 (1 HSPs)
scaffold0216 (101-153)||(29157-29209)
[»] scaffold0252 (1 HSPs)
scaffold0252 (23-94)||(17102-17172)
[»] scaffold0074 (1 HSPs)
scaffold0074 (103-190)||(32751-32837)
[»] chr7 (4 HSPs)
chr7 (39-101)||(5198098-5198160)
chr7 (30-94)||(30839724-30839788)
chr7 (103-157)||(2929478-2929532)
chr7 (124-190)||(6190585-6190651)


Alignment Details
Target: scaffold0284 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 2444 - 2254
Alignment:
Q  29 agacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaaca 128  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2444 agacaatttaaaattttaatagattgatggactattttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaaca 2345  T
Q  129 tataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  2344 tataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtgatg 2254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 6553010 - 6553206
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaa 122  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  6553010 aatcagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctagatctgtccctagatgcaaaagtaaatgttaa 6553109  T
Q  123 gaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg 219  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||    
T  6553110 gaaacatataagtgagatgatcgatatacctaatagactaagattttggatgatggtgtgctgtcaattgtatgattaaccttaacataatgtgatg 6553206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 6552610 - 6552806
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaa 122  Q
    ||||| ||||||||||||  ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6552610 aatcagagacaatttaaatctttaatacattgatggactattttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaa 6552709  T
Q  123 gaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg 219  Q
     |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  6552710 aaaacgtataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatg 6552806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 312784 - 312990
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccc----------tggatgcaaaag 112  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |          ||||||||||||    
T  312784 aatcagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctcgatctgtctcgatctgtctgtggatgcaaaag 312883  T
Q  113 taaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  312884 taaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataa 312983  T
Q  213 tgtgatg 219  Q
    |||||||    
T  312984 tgtgatg 312990  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 38932846 - 38932914
Alignment:
Q  29 agacaatttaaaattttaataca-ttgagggactattttagcctcacatgcatccaatgtctagatctg 96  Q
    ||||||||||||||||| ||||| ||||| |||||||||| || || ||||||| |||||||| |||||    
T  38932846 agacaatttaaaattttgatacatttgagagactattttaaccccatatgcatcaaatgtctaaatctg 38932914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 48828114 - 48828185
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatc 94  Q
    ||||| || ||||| |||||||  |||||||||||| ||||||||||| |||||  ||| ||||||||||||    
T  48828114 aatcaaaggcaattgaaaatttcgatacattgagggtctattttagccccacatatatcaaatgtctagatc 48828185  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 24181793 - 24181727
Alignment:
Q  124 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 190  Q
    ||||||||||||||||||||| |||||| |||| |  |||| |||||| ||||||| || |||||||    
T  24181793 aaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatatggtgtcaat 24181727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 6561023 - 6561075
Alignment:
Q  101 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct 153  Q
    ||||| |||||||| |||||||  |||||||||||||||||| | ||||||||    
T  6561023 tggatacaaaagtagatgttaaacaacatataagtgagatgaccaatatacct 6561075  T

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Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 41528623 - 41528440
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaa 122  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  41528623 aatcagagacaatttaaaattttaatacattgatgtactattttagcctcacatgtatccaatgtctagatatgtccctggatgcaaaagtaaatgttaa 41528524  T
Q  123 gaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaacctta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41528523 gaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaacctta 41528440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 36754650 - 36754454
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaa 122  Q
    ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  36754650 aatcagagacaatttaaaattttaatacattgatggactatcttagcctcacatgtatccaatgtctagatctatccctggatgcaaaagtaaatgttaa 36754551  T
Q  123 gaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||  |||||||||||    
T  36754550 gaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatctgctgtcaatagtatgattaaccttaacataatgtgatg 36754454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 43216975 - 43216917
Alignment:
Q  124 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtg 182  Q
    ||||||||||||||||||||| |||||| |||| |  ||||||||||| ||||||||||    
T  43216975 aaacatataagtgagatgatcaatatacataatgctttaagattttgggtgatgatgtg 43216917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 29 - 219
Target Start/End: Original strand, 35120 - 35310
Alignment:
Q  29 agacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaaca 128  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35120 agacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctagatttgtccctggatgcaaaagtaaatgttaagaaaca 35219  T
Q  129 tataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg 219  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||| ||||||    
T  35220 tataagttagatgatcgatatacctaatacactaagattttggatgatgttgtgctgtcaattgtatgattaaccttaacataaagtgatg 35310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 45919833 - 45919637
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaa 122  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  45919833 aatcagagacaatttaaaattttaatacattggtggactattttagtctcacatgtatccaatgtctagatccgtccctggatgcaaaagtaaatgttaa 45919734  T
Q  123 gaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg 219  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  45919733 gaaatatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatg 45919637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 49880252 - 49880450
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaa 122  Q
    ||||| |||||||||||||||| |||||||||  |||||||||||| ||| |||| |||||||||||||||| |||||||||||||||||||||||||||    
T  49880252 aatcagagacaatttaaaatttaaatacattggtggactattttagtctcgcatgtatccaatgtctagatccgtccctggatgcaaaagtaaatgttaa 49880351  T
Q  123 gaaacatataagtgagatgat--cgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg 219  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||  |||||||||||    
T  49880352 gaaacatataagtgagatgataaagatatacctaatacactaagattttgattgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatg 49880450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 40872618 - 40872549
Alignment:
Q  33 aatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctg 102  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||  ||| |||||||| || ||||||||    
T  40872618 aatttaaaattttgatacattaagggactattttagcctcacatatatcaaatgtctaaatttgtccctg 40872549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 16853665 - 16853745
Alignment:
Q  110 aagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 190  Q
    |||||||| || | ||||||||||||||||||||| |||||| |||| |  |||| |||||| |||||||||| |||||||    
T  16853665 aagtaaatcttgaaaaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatgtggtgtcaat 16853745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 31088829 - 31088746
Alignment:
Q  101 tggatgcaaaagtaaatgttaagaaacatata--agtgagatgatcgatatacctaatacactaagattttggatgatgatgtg 182  Q
    ||||||||| ||||  |||| |||||||||||  |||||||||||| ||||||||||| |  ||| ||||||||||||| ||||    
T  31088829 tggatgcaagagtaggtgttgagaaacatatataagtgagatgatcaatatacctaatgccttaatattttggatgatggtgtg 31088746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 9890603 - 9890556
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcc 70  Q
    ||||| |||||||||||||||||||||||||||  ||| |||||||||    
T  9890603 aatcaaagacaatttaaaattttaatacattgaaagaccattttagcc 9890556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 51849590 - 51849622
Alignment:
Q  35 tttaaaattttaatacattgagggactatttta 67  Q
    ||||||||||||||||||| |||||||||||||    
T  51849590 tttaaaattttaatacattcagggactatttta 51849622  T

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Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 31967451 - 31967255
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaa 122  Q
    ||||| |||||| ||||| |||| ||| ||||| |||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  31967451 aatcagagacaacttaaattttttataaattgatggactactttagcctcacatgtatccaatgtctagatttgtccctggatgcaaaagtaaatgttaa 31967352  T
Q  123 gaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  31967351 gaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtgatg 31967255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 23077895 - 23077824
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatc 94  Q
    ||||| |||||| |||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||    
T  23077895 aatcaaagacaacttaaaattttgatacattgaggaactattttagccccacatgtatccgatgtctagatc 23077824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 41746409 - 41746338
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatc 94  Q
    ||||| ||||||||||||||||| ||| ||| |||| ||||||||||| |||||  ||| ||||||||||||    
T  41746409 aatcagagacaatttaaaattttgatatattaagggtctattttagccccacatatatcaaatgtctagatc 41746338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 9470687 - 9470617
Alignment:
Q  29 agacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtcc 99  Q
    ||||||||||||||||| ||| ||| || |||||||||| || |||||| ||| |||||||||||| ||||    
T  9470687 agacaatttaaaattttgatatatttagtgactattttaaccccacatgtatcaaatgtctagatccgtcc 9470617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 36727670 - 36727631
Alignment:
Q  103 gatgcaaaagtaaatgttaagaaacatataagtgagatga 142  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  36727670 gatgcaaaagtagatgttaagaaacatatatgtgagatga 36727631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 36720129 - 36720169
Alignment:
Q  116 atgttaagaaacatataagtgagatgatcgatatacctaat 156  Q
    ||||| || |||||||||||||||||||| |||||||||||    
T  36720129 atgttgagcaacatataagtgagatgatccatatacctaat 36720169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 45054109 - 45054025
Alignment:
Q  106 gcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 190  Q
    |||||||||||| || || ||||||||||||||||  || |||||||| ||    |||||||||| |||| |||||| |||||||    
T  45054109 gcaaaagtaaatattgagcaacatataagtgagatattcaatatacctgatgtcttaagattttgaatgaagatgtggtgtcaat 45054025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 9023441 - 9023635
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaa 122  Q
    ||||| |||||||||||||||||||||||||||  |||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||    
T  9023441 aatcagagacaatttaaaattttaatacattgatagactatcttagcctcacatgtatccaatgtctatatttgtccctggatgcaaaagtaaatgttaa 9023540  T
Q  123 gaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtga 217  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  9023541 gaaacatacaagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtga 9023635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 27769846 - 27769810
Alignment:
Q  31 acaatttaaaattttaatacattgagggactatttta 67  Q
    |||||||||| |||| |||||||||||||||||||||    
T  27769846 acaatttaaattttttatacattgagggactatttta 27769810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 20067 - 19871
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaa 122  Q
    ||||| ||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||    
T  20067 aatcagagacaatttaaaattttaatacattgatggactatcttaacctcacatgtatccaatgtctagatttgtccctgaatgcaaaagtaaatgttaa 19968  T
Q  123 gaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||  |||||||||||    
T  19967 gaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgccaattgtattattaaccataacataatgtgatg 19871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 49 - 216
Target Start/End: Original strand, 50239968 - 50240138
Alignment:
Q  49 acattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaa---gaaacatataagtgagatgatcg 145  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||    
T  50239968 acattgatggactattttagcctcacatgtagccaatgtctagatctgtccctcgatgcaaaagtaaatgttaattagaaacatataagtgagatgatcg 50240067  T
Q  146 atatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  50240068 atatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtg 50240138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 43838652 - 43838718
Alignment:
Q  21 agaatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgt 87  Q
    ||||||| ||||||| ||||||||| ||||||||||| |||||||||||| |||||| ||| |||||    
T  43838652 agaatcagagacaatgtaaaattttgatacattgaggaactattttagccccacatgtatcaaatgt 43838718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 7672538 - 7672615
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccc 100  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||| ||  ||||| ||| ||| |||||||| |||||    
T  7672538 aatcagagacaatttaaaattttaatacattgatgaactattttaaccatacatgtatcaaatatctagatccgtccc 7672615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 30006209 - 30006165
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactatttta 67  Q
    ||||| ||| |||||||||||||||||||||| ||||||||||||    
T  30006209 aatcagagataatttaaaattttaatacattgtgggactatttta 30006165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 14249290 - 14249223
Alignment:
Q  124 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaatt 191  Q
    ||||||||||||||||||| | |||||| ||||||  |||| |||||| |||||||||| | ||||||    
T  14249290 aaacatataagtgagatgaccaatatacataatactttaaggttttgggtgatgatgtggtatcaatt 14249223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 6437626 - 6437692
Alignment:
Q  124 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 190  Q
    ||||||||||||||||||||| |||||| |||| |  |||| |||||  |||||||||| |||||||    
T  6437626 aaacatataagtgagatgatcaatatacataatgctttaaggttttgagtgatgatgtggtgtcaat 6437692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 6525043 - 6525122
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctg 102  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||| | |||||| ||| |||||||||||||| |||||    
T  6525043 aatcaaagacaatttaaaattttgatacattgatggactattttagtcccacatgtatcaaatgtctagatctgcccctg 6525122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 21237362 - 21237431
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctaga 92  Q
    ||||| ||||||||||||||||| |||||||  |||||||||||| || |||||| ||  ||||||||||    
T  21237362 aatcagagacaatttaaaattttgatacattatgggactattttaaccccacatgtatgaaatgtctaga 21237431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 12291667 - 12291698
Alignment:
Q  35 tttaaaattttaatacattgagggactatttt 66  Q
    ||||||||||||||||||||||||||||||||    
T  12291667 tttaaaattttaatacattgagggactatttt 12291698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 18090021 - 18089942
Alignment:
Q  111 agtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 190  Q
    |||| ||||| |||||||||||| |||||||| | ||||||||||| |  |||| |||||| ||| |||||| |||||||    
T  18090021 agtagatgttcagaaacatataattgagatgaacaatatacctaatgccttaaggttttgggtgaagatgtggtgtcaat 18089942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 26595978 - 26595897
Alignment:
Q  109 aaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 190  Q
    |||||| ||||| |||||||||||||| |||||| | ||  |||||||    |||| ||||||||||||||||| |||||||    
T  26595978 aaagtagatgtttagaaacatataagtaagatgaccaatgcacctaatgtcttaaggttttggatgatgatgtgatgtcaat 26595897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 31737254 - 31737166
Alignment:
Q  101 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaa 189  Q
    ||||||||| |||| ||||| |  |||||| |||||| |||||  |||||||||||||| |||||||| |  ||| |||||| ||||||    
T  31737254 tggatgcaagagtagatgttgaacaacatacaagtgatatgattcatatacctaatacattaagatttagtgtgaagatgtggtgtcaa 31737166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 11645 - 11711
Alignment:
Q  124 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 190  Q
    ||||||||||||||||||||| |||||| ||||||  |||| |||||| |||||||||| |||||||    
T  11645 aaacatataagtgagatgatcaatatacataatactttaaggttttgggtgatgatgtggtgtcaat 11711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 29209 - 29157
Alignment:
Q  101 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct 153  Q
    |||||||||||||| |||||||  |||||||||||||||||||| ||||||||    
T  29209 tggatgcaaaagtagatgttaaacaacatataagtgagatgatcaatatacct 29157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 17172 - 17102
Alignment:
Q  23 aatcatagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatc 94  Q
    ||||| ||||||||||||||||| |||||||||  ||||||||| ||| |||||| ||| ||||||||||||    
T  17172 aatcaaagacaatttaaaattttgatacattgaaagactatttt-gccccacatgtatcaaatgtctagatc 17102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 32751 - 32837
Alignment:
Q  103 gatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 190  Q
    ||||||| || | |||||||||||||||||||||||||||  ||||||||| || |  ||| ||||| |||||||||||| |||||||    
T  32751 gatgcaagagcatatgttaagaaacatataagtgagatgactgatatacctgatgcgttaaaatttt-gatgatgatgtggtgtcaat 32837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 5198098 - 5198160
Alignment:
Q  39 aaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccct 101  Q
    ||||||| |||||||||| ||||||||||||  || ||||||| |||||||||||||| ||||    
T  5198098 aaattttgatacattgagagactattttagctccatatgcatcaaatgtctagatctgcccct 5198160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 30839788 - 30839724
Alignment:
Q  30 gacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatc 94  Q
    ||||||| |||||| | ||||||| |||||||||||||||| || ||| ||| ||||||||||||    
T  30839788 gacaattaaaaattctgatacattaagggactattttagccccaaatgtatcaaatgtctagatc 30839724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 2929478 - 2929532
Alignment:
Q  103 gatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaata 157  Q
    |||| ||||||| ||||||||||||||||| ||||||||| | | ||||||||||    
T  2929478 gatgtaaaagtagatgttaagaaacatatatgtgagatgaccaagatacctaata 2929532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 6190585 - 6190651
Alignment:
Q  124 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 190  Q
    ||||||||||||| ||| ||| |||||| |||| |  ||||||||||| |||||||||| |||||||    
T  6190585 aaacatataagtgggattatcaatatacataatgctttaagattttgggtgatgatgtggtgtcaat 6190651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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