View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_421 (Length: 248)
Name: NF10145A_low_421
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_421 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 1874813 - 1874997
Alignment:
| Q |
56 |
tcagaacagagatgtggaccaattagggttccacgtggtagaaacaatcaaattattgactctactatattgtccattgattcattgttgtttgataggg |
155 |
Q |
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| T |
1874813 |
tcagaacagagatgtggaccaattaggcttccacgtggtagaaacaatcaaattattgactctactatattgtccattgattcattgttgtttgataggg |
1874912 |
T |
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| Q |
156 |
acaacacgacgaaatcacaggtgaatgacataactgcccatgaccagaacaacaagattaatagctctacggatagtaatccttc |
240 |
Q |
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| T |
1874913 |
acaacacgacgaaatcacaggtgaatgacataactgcccatgaccagaacaacaagattaatagctctacggatagtaatccttc |
1874997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 1883795 - 1883977
Alignment:
| Q |
56 |
tcagaacagagatgtggaccaattagggttccacgtggtagaaacaatcaaattattgactctactatattgtccattgattcattgttgtttgataggg |
155 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||| |||| |||||||||||| |||| ||||||||||||||||||||||||||||| | |
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| T |
1883795 |
tcagaacagagatgtgaaccaattagggttccacgtggtggaaagaatcgaattattgactc--ctatgttgtccattgattcattgttgtttgatagcg |
1883892 |
T |
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| Q |
156 |
acaacacgacgaaatcacaggtgaatgacataactgcccatgaccagaacaacaagattaatagctctacggatagtaatccttc |
240 |
Q |
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||||| |||||||||||||||||||||||||||| | |||||||||||||||||| | ||||| |||||||||||||| |||||| |
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| T |
1883893 |
acaacgcgacgaaatcacaggtgaatgacataaccgtccatgaccagaacaacaaaaataataactctacggatagtattccttc |
1883977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 24840436 - 24840482
Alignment:
| Q |
66 |
gatgtggaccaattagggttccacgtggtagaaacaatcaaattatt |
112 |
Q |
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| T |
24840436 |
gatgtggaccaattagggttccacttggtagaaacaatcaaactatt |
24840482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 9868200 - 9868153
Alignment:
| Q |
69 |
gtggaccaattagggttccacgtggtagaaacaatcaaattattgact |
116 |
Q |
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| T |
9868200 |
gtggaccaattagggttccacgtggtagaaacaatcgaattattgact |
9868153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 21848778 - 21848722
Alignment:
| Q |
56 |
tcagaacag-agatgtggaccaattagggttccacgtggtagaaacaatcaaattattga |
114 |
Q |
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| T |
21848778 |
tcagaacaggagatgtggaccaattagggttc---gtggtagaaacaatcaaattattga |
21848722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 3417467 - 3417529
Alignment:
| Q |
178 |
gaatgacataactgcccatgaccagaacaacaagattaatagctctacggatagtaatccttc |
240 |
Q |
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|||||||||| | |||||||||||||||||||||| |||||||||||| || |||| |||||| |
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| T |
3417467 |
gaatgacatagccgcccatgaccagaacaacaagaataatagctctacagacagtattccttc |
3417529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 28738175 - 28738219
Alignment:
| Q |
70 |
tggaccaattagggttccacgtggtagaaacaatcaaattattga |
114 |
Q |
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| T |
28738175 |
tggaccaattagagttccacgtggtgtaaacaatcaaatttttga |
28738219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 9199045 - 9198996
Alignment:
| Q |
63 |
agagatgtggaccaattagggttccacgtggtagaaacaatcaaattatt |
112 |
Q |
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| T |
9199045 |
agagaggtggaccgattagggttccacgtggtggaaacaattgaattatt |
9198996 |
T |
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