View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_424 (Length: 248)
Name: NF10145A_low_424
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_424 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 33762262 - 33762490
Alignment:
| Q |
20 |
catgaaacttgttggtagttccagccaaatgtgaatccagaggagtgagcttcaacaatctaggagcacctatcctgtttcccatacgaccaccaaaacc |
119 |
Q |
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| T |
33762262 |
catgaaacttgttggtagttccagccaaatgtgaatccagaggagtgagcttcaacaatctaggagcacctatcctgtttcccatacgaccaccaaaacc |
33762361 |
T |
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| Q |
120 |
agtctttgtcttcccatctttatcagtgaacaatgtacaaatcaagaccaaataagtatcagttgtacccaacacccactttccatcaaaagtaacatca |
219 |
Q |
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| T |
33762362 |
agtctttgtcttcccatctttatcagtgaacaatgtacaaatcaagaccaaataagtatcagttgtacccaacacccactttccatcaaaagtaacatca |
33762461 |
T |
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| Q |
220 |
acgcttgtaataggtgaaccaagccctgg |
248 |
Q |
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| T |
33762462 |
acgcttgtaataggtgaaccaagccctgg |
33762490 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 242
Target Start/End: Original strand, 46813065 - 46813210
Alignment:
| Q |
97 |
tttcccatacgaccaccaaaaccagtctttgtcttcccatctttatcagtgaacaatgtacaaatcaagaccaaataagtatcagttgtacccaacaccc |
196 |
Q |
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| T |
46813065 |
tttcccattctaccagcaaaaccatttttagttttcccatctttatcagtaaacaccgtacagataacaaccaagtaagtatccgtggttcccacaatcc |
46813164 |
T |
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| Q |
197 |
actttccatcaaaagtaacatcaacgcttgtaataggtgaaccaag |
242 |
Q |
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| T |
46813165 |
actttccatcaaaagttacatccacattagtaacaggtgaaccaag |
46813210 |
T |
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