View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_425 (Length: 248)

Name: NF10145A_low_425
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_425
NF10145A_low_425
[»] chr7 (7 HSPs)
chr7 (5-245)||(4008418-4008658)
chr7 (5-245)||(4013810-4014050)
chr7 (7-58)||(6028592-6028643)
chr7 (15-154)||(15902797-15902936)
chr7 (48-154)||(24339650-24339756)
chr7 (106-154)||(5409787-5409835)
chr7 (15-127)||(26329354-26329466)
[»] scaffold0376 (1 HSPs)
scaffold0376 (48-132)||(6320-6404)
[»] chr5 (2 HSPs)
chr5 (48-154)||(32766888-32766994)
chr5 (26-153)||(30098312-30098439)
[»] chr1 (5 HSPs)
chr1 (47-147)||(6612123-6612223)
chr1 (48-154)||(9828052-9828158)
chr1 (106-166)||(1486648-1486708)
chr1 (48-129)||(9629870-9629951)
chr1 (9-65)||(37055890-37055946)
[»] chr8 (4 HSPs)
chr8 (32-124)||(4122224-4122316)
chr8 (106-154)||(22197687-22197735)
chr8 (98-150)||(12570458-12570510)
chr8 (98-150)||(12570684-12570736)
[»] chr3 (2 HSPs)
chr3 (48-147)||(8039787-8039886)
chr3 (48-166)||(17005552-17005670)
[»] chr6 (3 HSPs)
chr6 (48-166)||(10294115-10294233)
chr6 (20-166)||(25038004-25038150)
chr6 (47-95)||(32320673-32320721)
[»] chr2 (1 HSPs)
chr2 (48-166)||(18420367-18420485)
[»] chr4 (3 HSPs)
chr4 (5-78)||(20521870-20521943)
chr4 (106-154)||(3947717-3947765)
chr4 (106-154)||(23292942-23292990)
[»] scaffold0053 (1 HSPs)
scaffold0053 (106-154)||(8853-8901)
[»] scaffold0044 (1 HSPs)
scaffold0044 (49-129)||(53189-53269)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 4008658 - 4008418
Alignment:
Q  5 atggacatcagacatgacacagacactgatacgtcgatatctttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcg 104  Q
    |||||||||||| |||||||||| ||||| |||  || | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  4008658 atggacatcagatatgacacagaaactgacacgcagacacctttaataatttgataaaattacatgattcaatgtaattgtatgtgtcggtattgtatcg 4008559  T
Q  105 atgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggagagtatgtgcttctgtgtggcagtttattgagcttgttgtgcagcagtttg 204  Q
    ||||| |||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4008558 atgtccgacacggcacgtgtccgacgccaggatacacctaatctgaggagagtatgtgcttctgtgtggcagattattgagcttgttgtgcagcagtttg 4008459  T
Q  205 acaacgtacaagacggagttgtctttcatattattcgacat 245  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  4008458 acaacgtacaagacggagttgtctttcatatttttcaacat 4008418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 4014050 - 4013810
Alignment:
Q  5 atggacatcagacatgacacagacactgatacgtcgatatctttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcg 104  Q
    |||||||||||| |||||||||| ||||| |||  || | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  4014050 atggacatcagatatgacacagaaactgacacgcagacacctttaataatttgataaaattacatgattcaatgtaattgtatgtgtcggtattgtatcg 4013951  T
Q  105 atgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggagagtatgtgcttctgtgtggcagtttattgagcttgttgtgcagcagtttg 204  Q
    ||||| |||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4013950 atgtccgacacggcacgtgtccgacgccaggatacacctaatctgaggagagtatgtgcttctgtgtggcagattattgagcttgttgtgcagcagtttg 4013851  T
Q  205 acaacgtacaagacggagttgtctttcatattattcgacat 245  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  4013850 acaacgtacaagacggagttgtctttcatatttttcaacat 4013810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 6028592 - 6028643
Alignment:
Q  7 ggacatcagacatgacacagacactgatacgtcgatatctttaataatttga 58  Q
    |||||||||||| |||||||||||||| || |||||||  ||||||||||||    
T  6028592 ggacatcagacacgacacagacactgacacatcgatatggttaataatttga 6028643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 15902797 - 15902936
Alignment:
Q  15 gacatgacacagacactgatacgtcgatatctttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggaca 114  Q
    |||| |||||||||||||| | | ||| | |  |||||||||||||||||  ||| ||| | ||| ||| ||||||||||| |||| ||| | |||||||    
T  15902797 gacacgacacagacactgacatgccgacaccaataataatttgataaaatcacataatttagtgtaattatatgtgtcggtgttgtgtcggtatcggaca 15902896  T
Q  115 tgacacgtgtccgacgccaggatacgcctaatctgaggag 154  Q
     ||||| || ||||  |||||| |||| |||| |||||||    
T  15902897 cgacacatgcccgagaccaggacacgcttaatttgaggag 15902936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 24339650 - 24339756
Alignment:
Q  48 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatc 147  Q
    ||||||||||| |||||  ||| ||||| ||| |||  | |||||||| | || ||| ||||||||| ||||||| |||||| || ||| ||||||||||    
T  24339650 taataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatc 24339749  T
Q  148 tgaggag 154  Q
     ||||||    
T  24339750 cgaggag 24339756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 5409835 - 5409787
Alignment:
Q  106 tgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggag 154  Q
    ||||||||| |||||||||||||| || ||| |||||||||| ||||||    
T  5409835 tgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggag 5409787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 26329466 - 26329354
Alignment:
Q  15 gacatgacacagacactgatacgtcgatatctttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggaca 114  Q
    |||| |||||||||||||| ||| ||| ||| |||||||||||| ||||   ||  ||||| ||| ||| ||||||||||  | || ||| |||| ||||    
T  26329466 gacacgacacagacactgacacgccgacatcgttaataatttgagaaaaacacacaattcagtgtaattatatgtgtcggcgtcgtgtcggtgtcagaca 26329367  T
Q  115 tgacacgtgtccg 127  Q
     ||||||||||||    
T  26329366 cgacacgtgtccg 26329354  T

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Target: scaffold0376 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 6320 - 6404
Alignment:
Q  48 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgcc 132  Q
    ||||||||||| |||||||||| ||||||||| ||| ||||||||||| | |||||| ||| || || |||||| ||||||||||    
T  6320 taataatttgacaaaattgcataattcaatgtaattatatgtgtcggtgtcgtatcggtgtggggcacgacacgggtccgacgcc 6404  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 32766994 - 32766888
Alignment:
Q  48 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatc 147  Q
    ||||||||||| ||||| |||  ||||||||| ||| |||||||  || | || ||| ||||| | | |||||||||||||| |||||||||| ||||||    
T  32766994 taataatttgagaaaatcgcacaattcaatgtaattatatgtgtttgtgtcgtgtcggtgtcgaaaacgacacgtgtccgacaccaggatacgtctaatc 32766895  T
Q  148 tgaggag 154  Q
    |||||||    
T  32766894 tgaggag 32766888  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 30098312 - 30098439
Alignment:
Q  26 gacactgatacgtcgatatctttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtc 125  Q
    |||||||| ||| ||| | | |||||||||||| |||||  ||| ||||||||| ||| ||  ||||||||| |  ||  ||||||||| ||||||||||    
T  30098312 gacactgacacgacgaaaccgttaataatttgagaaaatcacataattcaatgtaattatagatgtcggtatcgagtcagtgtcggacacgacacgtgtc 30098411  T
Q  126 cgacgccaggatacgcctaatctgagga 153  Q
     ||| |||||| || ||||||| |||||    
T  30098412 agacaccaggacacacctaatccgagga 30098439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 6612223 - 6612123
Alignment:
Q  47 ttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaat 146  Q
    |||||||||||| |||||| ||| ||||| ||| |||  | |||||||| | || ||||||||||||| || | ||||||||| |||||| |||||||||    
T  6612223 ttaataatttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtcgatgtcggacacgatatgtgtccgacaccaggacacgcctaat 6612124  T
Q  147 c 147  Q
    |    
T  6612123 c 6612123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 9828052 - 9828158
Alignment:
Q  48 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatc 147  Q
    |||||||||||||||||  ||| ||||| ||| ||| ||||||||||| | || ||  |||| |||| |||||||||||||| || ||| ||| ||||||    
T  9828052 taataatttgataaaatcacataattcagtgtaattttatgtgtcggtgtcgtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatc 9828151  T
Q  148 tgaggag 154  Q
     ||||||    
T  9828152 cgaggag 9828158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 1486708 - 1486648
Alignment:
Q  106 tgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggagagtatgtgcttc 166  Q
    ||||||||| |||||||||||||| || ||| |||||||||| |||||| || ||||||||    
T  1486708 tgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttc 1486648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 9629951 - 9629870
Alignment:
Q  48 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgac 129  Q
    |||||||||||||||||   || ||||| ||| ||| || |||||||| | || ||||||||||||| ||||| ||||||||    
T  9629951 taataatttgataaaatcatataattcagtgtgattataagtgtcggtgtcgtgtcgatgtcggacacgacacatgtccgac 9629870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 37055946 - 37055890
Alignment:
Q  9 acatcagacatgacacagacactgatacgtcgatatctttaataatttgataaaatt 65  Q
    ||||| |||||||||||||||||||||| ||||||    ||||||||||| ||||||    
T  37055946 acatcggacatgacacagacactgatacatcgatactgctaataatttgagaaaatt 37055890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 4122316 - 4122224
Alignment:
Q  32 gatacgtcgatatctttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgt 124  Q
    |||||||||| ||| ||||||||| |||||||||  || ||||| ||| ||| ||||||||||| |||| || |||||  ||| |||||||||    
T  4122316 gatacgtcgacatcattaataattagataaaattatataattcattgtaattatatgtgtcggtgttgtgtcaatgtcaaacacgacacgtgt 4122224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 22197735 - 22197687
Alignment:
Q  106 tgtcggacatgacacgtgtccgacgccaggat-acgcctaatctgaggag 154  Q
    |||||||||||||||||||||||| || |||| |||||||||||||||||    
T  22197735 tgtcggacatgacacgtgtccgacacc-ggatcacgcctaatctgaggag 22197687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 12570510 - 12570458
Alignment:
Q  98 tgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatctga 150  Q
    ||||||| |||| ||||  ||||||||||||| |||||| |||||||||||||    
T  12570510 tgtatcggtgtcagacactacacgtgtccgacaccaggacacgcctaatctga 12570458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 12570736 - 12570684
Alignment:
Q  98 tgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatctga 150  Q
    ||||||| |||| ||||  ||||||||||||| |||||| |||||||||||||    
T  12570736 tgtatcggtgtcagacactacacgtgtccgacaccaggacacgcctaatctga 12570684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 147
Target Start/End: Complemental strand, 8039886 - 8039787
Alignment:
Q  48 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatc 147  Q
    ||||||||||| ||||||  || ||||| ||| ||| ||||||||||| | || ||| |||||||||||| || |||||||| || ||| |||| |||||    
T  8039886 taataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatgagacatgtccgacaccgggacacgcttaatc 8039787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 166
Target Start/End: Complemental strand, 17005670 - 17005552
Alignment:
Q  48 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatc 147  Q
    |||||||||||||||||   || ||||| ||| ||| || |||||||| |||| | | |||| ||||| ||||||||| ||| |||||| ||  ||||||    
T  17005670 taataatttgataaaatcatataattcagtgtaattataagtgtcggtgttgtgttggtgtcagacataacacgtgtctgacaccaggacacctctaatc 17005571  T
Q  148 tgaggagagtatgtgcttc 166  Q
     |||||| || ||||||||    
T  17005570 cgaggagtgtttgtgcttc 17005552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 166
Target Start/End: Original strand, 10294115 - 10294233
Alignment:
Q  48 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatc 147  Q
    ||||||||||| | ||| ||||  |||||||| ||| ||||||||||| | || | | ||||||||| |||| ||||||||  | |||| ||  ||||||    
T  10294115 taataatttgagataatcgcatatttcaatgtaattatatgtgtcggtgtcgtgttggtgtcggacacgacatgtgtccgaaactaggacacagctaatc 10294214  T
Q  148 tgaggagagtatgtgcttc 166  Q
    ||||||| || ||||||||    
T  10294215 tgaggagtgtctgtgcttc 10294233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 25038150 - 25038004
Alignment:
Q  20 gacacagacactgatacgtcgatatctttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgaca 119  Q
    |||||||| ||||| |||| || | | |||||||||||| |||||| ||| ||| | ||| |||  |  |||||||||||| | | |||| |||| ||||    
T  25038150 gacacagatactgacacgttgacaccgttaataatttgagaaaattacataatttagtgtaattacaaatgtcggtattgtgttggtgtccgacacgaca 25038051  T
Q  120 cgtgtccgacgccaggatacgcctaatctgaggagagtatgtgcttc 166  Q
    |||||||||| |||| | |||| | | ||||| || |||||||||||    
T  25038050 cgtgtccgacaccagaacacgcatgacctgagaagtgtatgtgcttc 25038004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 32320721 - 32320673
Alignment:
Q  47 ttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggt 95  Q
    ||||||||||||||||||  ||| ||||||||||||| ||||| |||||    
T  32320721 ttaataatttgataaaatcacataattcaatgtcattatatgtatcggt 32320673  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 166
Target Start/End: Complemental strand, 18420485 - 18420367
Alignment:
Q  48 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatc 147  Q
    ||||||||||| |||||  ||| ||||||||  ||| || |||||||| |||| || ||||||||||||||| |||| ||||   | || ||||||||||    
T  18420485 taataatttgagaaaatcacataattcaatgcaattataagtgtcggtgttgtgtccatgtcggacatgacaagtgttcgacattatgacacgcctaatc 18420386  T
Q  148 tgaggagagtatgtgcttc 166  Q
     ||| || || ||||||||    
T  18420385 cgagaagtgtctgtgcttc 18420367  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 20521943 - 20521870
Alignment:
Q  5 atggacatcagacatgacacagacactgatacgtcgatatctttaataatttgataaaattgcatgattcaatg 78  Q
    ||||||| |||||| ||||| |||||||| ||| ||||| |  |||||||||||||||||  ||| ||||||||    
T  20521943 atggacaccagacacgacacggacactgacacgccgataccgataataatttgataaaatcacataattcaatg 20521870  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 3947765 - 3947717
Alignment:
Q  106 tgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggag 154  Q
    ||||||||| |||||||||||||| |||||| || ||||||| ||||||    
T  3947765 tgtcggacacgacacgtgtccgacaccaggacacacctaatccgaggag 3947717  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 23292990 - 23292942
Alignment:
Q  106 tgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggag 154  Q
    ||||||||| |||||||||||||| || ||| |||||||||| ||||||    
T  23292990 tgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggag 23292942  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 8853 - 8901
Alignment:
Q  106 tgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggag 154  Q
    ||||||||| |||||||||||||| ||  || |||||||||||||||||    
T  8853 tgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggag 8901  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 53189 - 53269
Alignment:
Q  49 aataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgac 129  Q
    |||||||||| |||||  ||| ||||| ||| ||| || ||||||||   || ||| ||||||||||||||||||||||||    
T  53189 aataatttgagaaaatcacataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggacatgacacgtgtccgac 53269  T

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