View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_427 (Length: 248)
Name: NF10145A_low_427
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_427 |
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| [»] scaffold0699 (2 HSPs) |
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Alignment Details
Target: scaffold0699 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: scaffold0699
Description:
Target: scaffold0699; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 1536 - 1738
Alignment:
| Q |
28 |
catcatcaaattacttaacagtagatatagccgaataaattgataattacaaaacatcaaacacatatacgataatgatgatgatgaaaatacaaacaaa |
127 |
Q |
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| T |
1536 |
catcatcaaattact-aacagtagctatagctgaataaattgataattacaaaacatcaaacacatatacgataatgatgatgatgaaaatacaaacaaa |
1634 |
T |
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| Q |
128 |
atcaattgcagaaaagaaagggatcaaaactacaggtataagatgaaacgaagaatacctgacacgctctccttgacgtcccttcaccatcttcacggca |
227 |
Q |
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| T |
1635 |
atcaattgcagaaaagaaagggatcaaaactacaggtataagatgaaacgaagagtacctgacacgctctccttgacgtcccttcaccatcttcacggca |
1734 |
T |
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| Q |
228 |
acac |
231 |
Q |
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|||| |
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| T |
1735 |
acac |
1738 |
T |
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Target: scaffold0699; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 7361 - 7413
Alignment:
| Q |
171 |
tgaaacgaagaatacctgacacgctctccttgacgtcccttcaccatcttcac |
223 |
Q |
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| T |
7361 |
tgaaacgaggagtacctgactcgctctccttgacgtcccttcaccatcttcac |
7413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 43601486 - 43601434
Alignment:
| Q |
171 |
tgaaacgaagaatacctgacacgctctccttgacgtcccttcaccatcttcac |
223 |
Q |
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| T |
43601486 |
tgaaacgaggagtacctgactcgctctccttgacgtcccttcaccatcttcac |
43601434 |
T |
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