View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_43 (Length: 424)
Name: NF10145A_low_43
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_43 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 21445873 - 21445454
Alignment:
| Q |
1 |
tcatatgaatcaagcttatggacacaacaattgtcttacctagaaatgtgagaaaccaaaatttgatagatataaaaagaacaagacaattatttcatct |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21445873 |
tcatatgaatcaagtttatgggcacaacaattgtcttacctaaaaatgtgagaaaccaaaatttgatagatataaaaagaacaagacaattatttcatct |
21445774 |
T |
|
| Q |
101 |
aacatgaagatccagcaaaaagcccattttaaatgtgtcaacactaacttatagttacgctctaaccagatttattgttatatctgaatgtgtcggatta |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| |||||||| |
|
|
| T |
21445773 |
gacatgaagatccagcaaaaagtccattttaaatatgtcaacactaacttagagttacgctctaatcagatttattgttatatctgattgtatcggatta |
21445674 |
T |
|
| Q |
201 |
aggtgcaaatgattagtcttgcatcgactaaggatgaagtaatacataagatatgcaattcatatgccctgtgttttaaggtcgatgatatgtgttgttt |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
21445673 |
aggtacaaatgattagtcttgcatcgactaaggatgaagtaatacataagatatgcaattcatatgccctatgttttaaggtcgatgacatgtgttgttt |
21445574 |
T |
|
| Q |
301 |
tccaaactctaacaacttataacaaatctaatttgccttgatgggggagtgagattatgataattatatccttttatcatatctctgcgtggaaatgcag |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
21445573 |
tccaaactctaacaagttataacaaatctaatttgccttgatgggggagtgagattatgataattagatccttttatcatagctctgcgtggaaatgcag |
21445474 |
T |
|
| Q |
401 |
ttaagagacgttacttgttg |
420 |
Q |
| |
|
||||||| || |||||||| |
|
|
| T |
21445473 |
ttaagaggtgtgacttgttg |
21445454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University