View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_432 (Length: 248)
Name: NF10145A_low_432
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_432 |
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| [»] scaffold0769 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0769 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 51 - 248
Target Start/End: Original strand, 6292 - 6488
Alignment:
| Q |
51 |
attttgaaaattctccaaatttattatcaaaacaaagtaataatccatattgaaacatatgaattatcctctgaaattacattacctcaaaattttctta |
150 |
Q |
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| T |
6292 |
attttgaaaattctccaaatttattatcaaaacaaagtaataatccatattgaaacatatgaattatcctctgaaattacattacctcaaa-ttttctta |
6390 |
T |
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| Q |
151 |
tccaaacatactagctaaactttgcctcatgcacttctacggttctattgaaagattcactatatatgtaataataacagctagtaaagaaaacttga |
248 |
Q |
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| T |
6391 |
tccaaacatactagctaaactttgcctcatgcacttctacggttctattgaaagattcactatatatgtaataataacatctagtaaagaaaacttga |
6488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 51 - 248
Target Start/End: Complemental strand, 34633622 - 34633426
Alignment:
| Q |
51 |
attttgaaaattctccaaatttattatcaaaacaaagtaataatccatattgaaacatatgaattatcctctgaaattacattacctcaaaattttctta |
150 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34633622 |
attttgaaaattctccaaatttattatcaaaacaaagtaataatccatattgaaacatatgaattatcctctgaaattacattacctcaaa-ttttctta |
34633524 |
T |
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| Q |
151 |
tccaaacatactagctaaactttgcctcatgcacttctacggttctattgaaagattcactatatatgtaataataacagctagtaaagaaaacttga |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34633523 |
tccaaacatactagctaaactttgcctcatgcacttctacggttctattgaaagattcactatatatgtaataataacatctagtaaagaaaacttga |
34633426 |
T |
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