View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_433 (Length: 248)
Name: NF10145A_low_433
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_433 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 19369881 - 19370106
Alignment:
| Q |
6 |
gtttggagttttgtatttgtatctactgattcggcaatctgaattgtcatggtgtttagtactcttgagttcttcaagatatattttgcaaattgaatct |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19369881 |
gtttggagttttgtatttgtatctactgattcggcaatctgaattgtcatggtgtttagtactgttgagttcttcaagatatattttgcaaattgaatct |
19369980 |
T |
|
| Q |
106 |
cacagtttatgcggcagtaatttctaagtgagcatgttgtgagatgagataaaaggcatgctggtacagtatgtagttccttccaactgccatcttcaaa |
205 |
Q |
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| T |
19369981 |
cacagtttaggcggcagtaatttctaagtgagcatgttgtgagatgagataaaaggcatgctggtacagtatgtagttccttccaactgccatcttcaaa |
19370080 |
T |
|
| Q |
206 |
attgtttactgtatcaacatgacaat |
231 |
Q |
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|||||||||||||||||| ||||||| |
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| T |
19370081 |
attgtttactgtatcaacctgacaat |
19370106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 49856554 - 49856712
Alignment:
| Q |
15 |
tttgtatttgtatctactgattcggcaatctgaattgtcatggtgtttagtactcttgagttcttcaagatatattttgcaaattgaatctcacagttta |
114 |
Q |
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|||||||||||||| | ||| |||| |||||||| ||||| || ||||||||||||| |||| || |||||||||||||||||||| ||| || |||| |
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| T |
49856554 |
tttgtatttgtatccagaaatttggcactctgaattttcatgatgcttagtactcttgaattctgcatgatatattttgcaaattgaagctcgcaattta |
49856653 |
T |
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| Q |
115 |
tgcggcagtaatttctaagtgagcatgttgtgagatgagataaaaggcatgctggtaca |
173 |
Q |
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| T |
49856654 |
tgcggctataacttctaagtgagcatgttgtaagatgagataaaaggcattctggtaca |
49856712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 50815518 - 50815364
Alignment:
| Q |
15 |
tttgtatttgtatctactgattcggcaatctgaattgtcatggtgtttagtactcttgagttcttcaagatatattttgcaaattgaatctcacagttta |
114 |
Q |
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||||||||||| ||||| ||||| ||| |||||||| |||||||| ||||||||||||| ||| | |||||| || |||||||||| |||||| || | |
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| T |
50815518 |
tttgtatttgtctctacggattctgcactctgaattatcatggtgcttagtactcttgaattccggatgatatagttagcaaattgaaactcacaattga |
50815419 |
T |
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| Q |
115 |
tgcggcagtaatttctaagtgagcatgttgtgagatgagataaaaggcatgctgg |
169 |
Q |
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|||| | ||||||| ||| ||||||||||| |||||||||||||||||| |||| |
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| T |
50815418 |
tgcgactataatttcgaagggagcatgttgtaagatgagataaaaggcattctgg |
50815364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 50860346 - 50860500
Alignment:
| Q |
15 |
tttgtatttgtatctactgattcggcaatctgaattgtcatggtgtttagtactcttgagttcttcaagatatattttgcaaattgaatctcacagttta |
114 |
Q |
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||||||||||| ||||| ||||| ||| |||||||| |||||||| ||||||||||||| ||| | |||||| || |||||||||| |||||| || | |
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| T |
50860346 |
tttgtatttgtctctacggattctgcactctgaattatcatggtgcttagtactcttgaattccggatgatatagttagcaaattgaaactcacaattga |
50860445 |
T |
|
| Q |
115 |
tgcggcagtaatttctaagtgagcatgttgtgagatgagataaaaggcatgctgg |
169 |
Q |
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|||| | ||||||| ||| ||||||||||| |||||||||||||||||| |||| |
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| T |
50860446 |
tgcgactataatttcgaagggagcatgttgtaagatgagataaaaggcattctgg |
50860500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 169
Target Start/End: Complemental strand, 39559717 - 39559581
Alignment:
| Q |
33 |
gattcggcaatctgaattgtcatggtgtttagtactcttgagttcttcaagatatattttgcaaattgaatctcacagtttatgcggcagtaatttctaa |
132 |
Q |
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|||| |||| |||||||||||||||| ||| ||||||||| |||| || |||||||| |||||||||| ||||||||| ||||||| |||||| ||| |
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| T |
39559717 |
gatttggcactctgaattgtcatggtccttaatactcttgaattctgcattatatatttagcaaattgaaactcacagttaatgcggctataatttataa |
39559618 |
T |
|
| Q |
133 |
gtgagcatgttgtgagatgagataaaaggcatgctgg |
169 |
Q |
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| ||||||||| ||||||||||||| |||||| |||| |
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| T |
39559617 |
gcgagcatgttctgagatgagataagaggcattctgg |
39559581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 49867974 - 49868094
Alignment:
| Q |
49 |
ttgtcatggtgtttagtactcttgagttcttcaagatatattttgcaaattgaatctcacagtttatgcggcagtaatttctaagtgagcatgttgtgag |
148 |
Q |
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| T |
49867974 |
ttgtcatggtcctcagtactcctgaattctgcattatatattttgcaaatggaaactcacaatttatgcggctgtaatttctaagtgagcaagttgtaag |
49868073 |
T |
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| Q |
149 |
atgagataaaaggcatgctgg |
169 |
Q |
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||||||| |||||||| |||| |
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| T |
49868074 |
atgagatgaaaggcattctgg |
49868094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 49973001 - 49973158
Alignment:
| Q |
7 |
tttggagttttgtatttgtatctactgattcggcaatctgaattgtcatggtgtttagtactcttgagttcttcaagatatattttgcaaattgaatctc |
106 |
Q |
| |
|
||||||| |||||| ||||||||| ||| |||| |||||||| |||||| | | ||||||||||| ||||||| |||||||||||||| |||| ||| |
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| T |
49973001 |
tttggagctttgtagttgtatctaggaatttggcactctgaattttcatggcgctaagtactcttgaattcttcataatatattttgcaaagtgaagctc |
49973100 |
T |
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| Q |
107 |
acagtttatgcggcagtaatttctaagtgagcatgttgtgagatgagataaaaggcat |
164 |
Q |
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|
||| | |||| || |||||||||||||||||||||| |||| |||||||||||| |
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| T |
49973101 |
acaagtgatgccccaataatttctaagtgagcatgttgatagataggataaaaggcat |
49973158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 49979304 - 49979391
Alignment:
| Q |
15 |
tttgtatttgtatctactgattcggcaatctgaattgtcatggtgtttagtactcttgagttcttcaagatatattttgcaaattgaa |
102 |
Q |
| |
|
||||||||||| ||||| |||| |||| ||||||||||||||| ||||||||||| | || | || |||||| || |||||||||| |
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| T |
49979304 |
tttgtatttgtctctacggatttggcaccctgaattgtcatggttcttagtactcttcaattatgcatgatatagttagcaaattgaa |
49979391 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 2063 - 2216
Alignment:
| Q |
7 |
tttggagttttgtatttgtatctactgattcggcaatctgaattgtcatggtgtttagtactcttgagttcttcaagatatattttgcaaattgaatctc |
106 |
Q |
| |
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||||||| |||||||||||||||| |||||||| ||||||||||||||||| || || |||||| |||| || ||||||| |||||||| ||| ||| |
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| T |
2063 |
tttggagctttgtatttgtatctaagaattcggcactctgaattgtcatggtgcgtaatattcttgaattctgcatgatatatcttgcaaatggaagctc |
2162 |
T |
|
| Q |
107 |
acagtttatgcggcagtaatttctaagtgagcatgttgtgagatgagataaaag |
160 |
Q |
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||| |||||||| | |||||||||||||||||||||||| |||||||||||||| |
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| T |
2163 |
acaatttatgcgactgtaatttctaagtgagcatgttgtaagatgagataaaag |
2216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 3609 - 3762
Alignment:
| Q |
7 |
tttggagttttgtatttgtatctactgattcggcaatctgaattgtcatggtgtttagtactcttgagttcttcaagatatattttgcaaattgaatctc |
106 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| ||||||||||||||||| || || |||||| |||| || ||||||| |||||||| ||| ||| |
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| T |
3609 |
tttggagctttgtatttgtatctaagaattcggcactctgaattgtcatggtgcgtaatattcttgaattctgcatgatatatcttgcaaatggaagctc |
3708 |
T |
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| Q |
107 |
acagtttatgcggcagtaatttctaagtgagcatgttgtgagatgagataaaag |
160 |
Q |
| |
|
||| |||||||| | |||||||||||||||||||||||| |||||||||||||| |
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|
| T |
3709 |
acaatttatgcgactgtaatttctaagtgagcatgttgtaagatgagataaaag |
3762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 173
Target Start/End: Complemental strand, 31211807 - 31211699
Alignment:
| Q |
65 |
tactcttgagttcttcaagatatattttgcaaattgaatctcacagtttatgcggcagtaatttctaagtgagcatgttgtgagatgagataaaaggcat |
164 |
Q |
| |
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||||| |||||||| || ||||||||||||||| |||| |||||||||||||| | ||||||||||||||||||| |||||| ||||||| || |
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| T |
31211807 |
tactcctgagttctgcatgatatattttgcaaactgaagctcacagtttatgcttcttatgcttctaagtgagcatgttgtaagatgatataaaagacaa |
31211708 |
T |
|
| Q |
165 |
gctggtaca |
173 |
Q |
| |
|
|||||||| |
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|
| T |
31211707 |
tctggtaca |
31211699 |
T |
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