View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_438 (Length: 248)

Name: NF10145A_low_438
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_438
NF10145A_low_438
[»] chr3 (1 HSPs)
chr3 (1-246)||(3176099-3176344)
[»] chr1 (1 HSPs)
chr1 (1-240)||(24541297-24541537)
[»] chr2 (1 HSPs)
chr2 (1-246)||(41525215-41525460)
[»] chr5 (1 HSPs)
chr5 (15-230)||(20963741-20963957)
[»] chr6 (1 HSPs)
chr6 (16-135)||(14675143-14675262)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 3176099 - 3176344
Alignment:
Q  1 ggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3176099 ggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagcta 3176198  T
Q  101 tgaaagaggttatttcgagaaagagaaaaaccaatactaaagttttggccattttttggtttaagagaaggtaaccttgagagagagggagatgagtgat 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||    
T  3176199 tgaaagaggttatttggagaaagagaaaaaccaatactaaagttttggccattttttggtttaagagaatgtaaccttgaaagagagggagttgagtgat 3176298  T
Q  201 gttggtgtgttgagagagtgtgatagttgatctatttataagagct 246  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  3176299 gttggtgtgttgagagagtgtgagagttgatctatttataagagct 3176344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24541297 - 24541537
Alignment:
Q  1 ggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagcta 100  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||| ||||| ||| |||||||||||||| ||||||||||| |||||| || ||||    
T  24541297 ggtgggctagctaatggtttatgaacaggtgacttagttggggaatgatgtggagttgctggtttgtgatgaagagtttctagcttttcagcaaatgcta 24541396  T
Q  101 tgaaagaggttatttcgagaaagagaaaaaccaatactaaagttttggccattttttggt-ttaagagaaggtaaccttgagagagagggagatgagtga 199  Q
    ||||||||||||||| |||||||||||||| |||||  | |||||| |||||||||| || |||||||||||||||||||| ||||||||||||||||||    
T  24541397 tgaaagaggttatttggagaaagagaaaaaacaataagagagttttcgccatttttttgtgttaagagaaggtaaccttgaaagagagggagatgagtga 24541496  T
Q  200 tgttggtgtgttgagagagtgtgatagttgatctatttata 240  Q
    ||||| |||||||||||||||||| ||||||||||||||||    
T  24541497 tgttgatgtgttgagagagtgtgagagttgatctatttata 24541537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 41525215 - 41525460
Alignment:
Q  1 ggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagcta 100  Q
    |||||| |||| ||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||| || ||||    
T  41525215 ggtgggttagccaatggtttatgaaccggtgacttagttgggg-atgaagtggagttgctggtttgtgatgaagagtttctagctcttcagcaaatgcta 41525313  T
Q  101 tgaaagaggttatttcgagaaagagaaaaac-caatactaaagttttggccattttttggtttaagagaaggtaaccttgagagagagggagatgagtga 199  Q
    |||| |||||||||| ||| ||||||||||  |||||||| |||||||||||||||||| |||||||||| | ||| |||| |||||||||||  ||| |    
T  41525314 tgaaggaggttatttggagtaagagaaaaaaacaatactagagttttggccattttttgttttaagagaatgcaactttgaaagagagggagagaagtaa 41525413  T
Q  200 tgttggtgtgttgagagagtgtgatagttgatctatttataagagct 246  Q
    |||||||| ||||||||||||||| |||||||||||||||| |||||    
T  41525414 tgttggtgggttgagagagtgtgagagttgatctatttataggagct 41525460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 20963957 - 20963741
Alignment:
Q  15 tggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatt 114  Q
    ||||||||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||  || ||||||||||||||||||    
T  20963957 tggtttatgaaccggtgacttagttgggggatgaagtggagttgctggtttgttatgaaaagtttctagctcttcagtaaatgctatgaaagaggttatt 20963858  T
Q  115 tcgagaaagagaaaaaccaatactaaagttttggccatt--ttttggtttaagagaaggtaaccttgagagagagggagatgagtgatgttggtgtgttg 212  Q
    | |||||||||||||| |||||| | |||||||||||||  |||||  ||||||||| | |||||||| ||||||||||| || ||||||||||||||||    
T  20963857 tggagaaagagaaaaaacaataccagagttttggccattttttttgtgttaagagaaag-aaccttgaaagagagggagaggattgatgttggtgtgttg 20963759  T
Q  213 agagagtgtgatagttga 230  Q
    ||||||||||| ||||||    
T  20963758 agagagtgtgagagttga 20963741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 14675143 - 14675262
Alignment:
Q  16 ggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttattt 115  Q
    |||||||| | ||||||||| |||||||||||||||||  ||| |||||||||||||| |||||| |||||||| || ||  | | ||||||||||||||    
T  14675143 ggtttatgcaccggtgactttgttgggggatgaagtggtgttgttggtttgtgatgaagagtttcaagctcttccgcaaacacaacgaaagaggttattt 14675242  T
Q  116 cgagaaagagaaaaaccaat 135  Q
     ||| |||||||||| ||||    
T  14675243 ggagtaagagaaaaatcaat 14675262  T

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