View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_443 (Length: 247)
Name: NF10145A_low_443
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_443 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 3036837 - 3036612
Alignment:
| Q |
23 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttc-cccat |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3036837 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttttcccat |
3036738 |
T |
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| Q |
122 |
aggggacattcattctgatagtgtcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctgaac |
221 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3036737 |
aggggacattcattctgatagtgtcccagcttgtgacacttataacactcaatagaatctttgttgattcttcccctaccctttcctctagcacctgaat |
3036638 |
T |
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| Q |
222 |
gccctcttcctctaccaaatcccata |
247 |
Q |
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||||||||||||||||| |||||||| |
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| T |
3036637 |
gccctcttcctctaccatatcccata |
3036612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 16863584 - 16863363
Alignment:
| Q |
23 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata |
122 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | | |||| | |||||||| | |||||| |
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| T |
16863584 |
aaccatacctcatctttggcatttgtgttcaaacatgattgagccatcagaagcaattcaccatcttcaaactcaacatagtgtgcattttcttcccata |
16863485 |
T |
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| Q |
123 |
ggggacattcattctgatagtgtcccagctcgtgacac-ttataacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctgaac |
221 |
Q |
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| ||||||||||| |||||||||||||||| ||||||| || || || |||| | | |||| |||||||| |||||| |||||||| ||||||||| |
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| T |
16863484 |
gaggacattcattttgatagtgtcccagcttgtgacactttgtagcattcaacacttccattgttaattcttcctctaccccttcctctaacacctgaac |
16863385 |
T |
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| Q |
222 |
gccctcttcctctaccaaatcc |
243 |
Q |
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| T |
16863384 |
gccctcttcctctaccatatcc |
16863363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 20542511 - 20542323
Alignment:
| Q |
23 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata |
122 |
Q |
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|||||||||||||||||||| |||||||||| ||| ||||||||||| ||||| ||||||||||||||||| | |||| | || ||||||| | |||||| |
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| T |
20542511 |
aaccatacctcatctttggcgtttgtgttcaagcaagattgagccataagaagtaattcaccatcttcaaactcagcaaagttagcattttcttcccata |
20542412 |
T |
|
| Q |
123 |
ggggacattcattctgatagtgtcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctcta |
211 |
Q |
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| ||||| |||||||||||||||||||||| ||||||||| ||||||||| | || ||||||||||||| || ||| |||||||| |
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| T |
20542411 |
gaggacactcattctgatagtgtcccagcttgtgacacttgaaacactcaacacttgctttgttgattcttcctctgccccttcctcta |
20542323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 20529205 - 20529064
Alignment:
| Q |
23 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata |
122 |
Q |
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|||||||||||||||||| |||||||||||| |||| ||||||||| ||| | ||||||||||||||||||| ||||||||||| |||| | |||||| |
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| T |
20529205 |
aaccatacctcatctttgacatttgtgttcaatcatgtttgagccatgagatgaaattcaccatcttcaaattcagcataatttgaatttggttcccata |
20529106 |
T |
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| Q |
123 |
ggggacattcattctgatagtgtcccagctcgtgacacttat |
164 |
Q |
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| T |
20529105 |
gatgacattcattctgatagtgtcctagcttgtgacacttat |
20529064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 173
Target Start/End: Original strand, 40612799 - 40612949
Alignment:
| Q |
23 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata |
122 |
Q |
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|||||||||||||||||||| |||||||||| ||| ||||| ||||| ||||| ||||||||||||||||| | |||| | || ||||||| | |||||| |
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| T |
40612799 |
aaccatacctcatctttggcgtttgtgttcaagcaagattgggccataagaagtaattcaccatcttcaaacttagcaaagttagcattttcttcccata |
40612898 |
T |
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| Q |
123 |
ggggacattcattctgatagtgtcccagctcgtgacacttataacactcaa |
173 |
Q |
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| T |
40612899 |
gaggacactcattctggtagtgtcccaacttgcgacacttaaaacactcaa |
40612949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 40612968 - 40613002
Alignment:
| Q |
204 |
ttcctctagcacctgaacgccctcttcctctacca |
238 |
Q |
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||||||||||||||||||| ||||||||||||||| |
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| T |
40612968 |
ttcctctagcacctgaacgtcctcttcctctacca |
40613002 |
T |
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