View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_445 (Length: 247)
Name: NF10145A_low_445
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_445 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41311249 - 41311027
Alignment:
| Q |
1 |
atggttctattcattggctgatttatgatgataagactgaaagggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctccc |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311249 |
atggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctccc |
41311150 |
T |
|
| Q |
101 |
agatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311149 |
agatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagata |
41311050 |
T |
|
| Q |
201 |
tgggtgatgcaagaatacacaat |
223 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
41311049 |
tgggtgatgcaagaatacgcaat |
41311027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 43164927 - 43164710
Alignment:
| Q |
1 |
atggttctattcattggctgatttatgatgataagactgaaagggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctccc |
100 |
Q |
| |
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|||||||||||||||||||| ||||| || || ||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||| |||||| || |
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| T |
43164927 |
atggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgatttaaaggaaaagacaatgtcagagattgctcttcc |
43164828 |
T |
|
| Q |
101 |
agatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagata |
200 |
Q |
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| T |
43164827 |
agatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatcagcgtatggaatatggagatgtctacacttaagata |
43164728 |
T |
|
| Q |
201 |
tgggtgatgcaagaatac |
218 |
Q |
| |
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||||| |||||||||||| |
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| T |
43164727 |
tgggtaatgcaagaatac |
43164710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 30165678 - 30165883
Alignment:
| Q |
1 |
atggttctattcattggctgatttatgatgataagactgaaagggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctccc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| || || ||||||||| ||||||||||||||||||||||||||||||| |||| || |||||| ||||| || |
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| T |
30165678 |
atggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggcagagatagctcttcc |
30165777 |
T |
|
| Q |
101 |
agatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagata |
200 |
Q |
| |
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| ||| || || | ||| |||||||||||||| |||||||| ||||||| |||||||||||| |||||| | ||||| |||||||| |
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| T |
30165778 |
aaatgattgttctcgtg------------gaatttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggtctacagttaagata |
30165865 |
T |
|
| Q |
201 |
tgggtgatgcaagaatac |
218 |
Q |
| |
|
|||||||||||||||||| |
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| T |
30165866 |
tgggtgatgcaagaatac |
30165883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 28181080 - 28180965
Alignment:
| Q |
5 |
ttctattcattggctgatttatgatgataagactgaaagggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagat |
104 |
Q |
| |
|
|||||||||||||||| ||||| || || |||| ||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| |
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| T |
28181080 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat |
28180981 |
T |
|
| Q |
105 |
ggtttttatagtgatt |
120 |
Q |
| |
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| ||||||||| |||| |
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| T |
28180980 |
gatttttatagggatt |
28180965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 30125197 - 30124981
Alignment:
| Q |
7 |
ctattcattggctgatttatgatgataagactgaaagggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatgg |
106 |
Q |
| |
|
|||||||||||||| || || || || |||| | | |||||||||| |||||||||||||||||||| |||| ||||||| | ||||| ||| ||| |
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|
| T |
30125197 |
ctattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaagcgacaatgtcagaaatagctcttccaaatga |
30125098 |
T |
|
| Q |
107 |
tttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtg |
206 |
Q |
| |
|
|||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| | | |||||| | || |||||||| ||||| |
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| T |
30125097 |
tttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggattcttgagatggatgcagttaagatacgggtg |
30124998 |
T |
|
| Q |
207 |
atgcaagaatacacaat |
223 |
Q |
| |
|
||||| |||||| |||| |
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|
| T |
30124997 |
atgcatgaatacgcaat |
30124981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 30131151 - 30131068
Alignment:
| Q |
7 |
ctattcattggctgatttatgatgataagactgaaagggatgttattattgcctttgatttaaaggaaatgacactgtcagaga |
90 |
Q |
| |
|
|||||||||||||| ||||| || || |||| ||||||||||||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
30131151 |
ctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgacaatgtcagaga |
30131068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 30120112 - 30120068
Alignment:
| Q |
46 |
atgttattattgcctttgatttaaaggaaatgacactgtcagaga |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | ||||||| |
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|
| T |
30120112 |
atgttattattgcctttgatttaaaggaaacgacaatatcagaga |
30120068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
188 |
tacacttaagatatgggtgatgcaagaatacaca |
221 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 21426641 - 21426703
Alignment:
| Q |
43 |
gggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
105 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| |
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|
| T |
21426641 |
gggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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