View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_448 (Length: 247)
Name: NF10145A_low_448
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_448 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 1831845 - 1831604
Alignment:
| Q |
6 |
agggtcaactagctccttatcttcattctttacacacctaaggt-cacttcagatggtgtagatgcaggattgaagcccatcatgttggatctctttaaa |
104 |
Q |
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| T |
1831845 |
agggtcaactagctcttcatcttcattctttacaagcttaagattcacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctctttaaa |
1831746 |
T |
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| Q |
105 |
atatttgtagcatatttcttctggtgcaccactaaacattatgaggttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatct |
204 |
Q |
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| T |
1831745 |
atatttgtagcatatttcttctggtgcatcactaaacattctgaagttttagtgaattccattccagggaaatatgttaactttcccaaatcagtcatct |
1831646 |
T |
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| Q |
205 |
caaattctctcatcatttgtcttttgaaatttttctatctatg |
247 |
Q |
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| T |
1831645 |
caaattctgtcatcatttgtcttttg-aatttttctgtctatg |
1831604 |
T |
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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 232
Target Start/End: Complemental strand, 9817069 - 9816931
Alignment:
| Q |
94 |
atctctttaaaatatttgtagcatatttcttctggtgcaccactaaacattatgaggttttagtgaattccatcccaaggaaatattttaactttcccaa |
193 |
Q |
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| T |
9817069 |
atctcttcaaaatatctattgcatatttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaccttcccaa |
9816970 |
T |
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| Q |
194 |
atcttccatctcaaattctctcatcatttgtcttttgaa |
232 |
Q |
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| T |
9816969 |
accagtcatgtcaaactctttcatcatttgtcttttgaa |
9816931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 15490517 - 15490592
Alignment:
| Q |
157 |
tgaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcatcatttgtcttttgaa |
232 |
Q |
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| T |
15490517 |
tgaattccatttcaaggaagtatattaactttcccaaatcagccatatcaaattctctcatcatttgtcttatgaa |
15490592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 16944109 - 16944223
Alignment:
| Q |
118 |
atttcttctggtgcaccactaaacattatgaggttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcat |
217 |
Q |
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| T |
16944109 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
16944208 |
T |
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| Q |
218 |
catttgtcttttgaa |
232 |
Q |
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| T |
16944209 |
catttgtcttttgaa |
16944223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 17014774 - 17014888
Alignment:
| Q |
118 |
atttcttctggtgcaccactaaacattatgaggttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcat |
217 |
Q |
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| T |
17014774 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
17014873 |
T |
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| Q |
218 |
catttgtcttttgaa |
232 |
Q |
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| T |
17014874 |
catttgtcttttgaa |
17014888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 190
Target Start/End: Complemental strand, 30065339 - 30065210
Alignment:
| Q |
61 |
gtgtagatgcaggattgaagcccatcatgttggatctctttaaaatatttgtagcatatttcttctggtgcaccactaaacattatgaggttttagtgaa |
160 |
Q |
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| T |
30065339 |
gtgtagatgcaggattgcagttcaacatgttgaacctcttgagaatatcagaagcatacttcttctgatgcttaactagaccttcagaagttttagtgaa |
30065240 |
T |
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| Q |
161 |
ttccatcccaaggaaatattttaactttcc |
190 |
Q |
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| T |
30065239 |
ttccataccaaggaagtatgttaactttcc |
30065210 |
T |
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