View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_449 (Length: 247)
Name: NF10145A_low_449
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_449 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 19067627 - 19067848
Alignment:
| Q |
15 |
acatcatggtatatatgtcagtaagaaacaagtgcatcaagtttccgtnnnnnnntgtgcgttgtatccataagnnnnnnngtgtagataatgtgatgaa |
114 |
Q |
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| T |
19067627 |
acattatggtatatatgtaagtaagaaacaagtgcatcaagcttccgtaaaagaatgtgtgctatatccataagaaaaaaagtgtagataatgtgatgaa |
19067726 |
T |
|
| Q |
115 |
aatacaagggtaaatagggaaaaagcaaaatgttcagccattctgtcctctttcttcgcatctatggagagaagataaattgtgcgaaccccacacaaat |
214 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| |
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| T |
19067727 |
aatacaagggtaaatagtgaaaaagcaaaatgttcagctattctctcctctttcttcgcatctatgcagagaagataaattgtgtggaccccacacaaat |
19067826 |
T |
|
| Q |
215 |
tcagtctctcttctttgtttct |
236 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
19067827 |
tcagtctctcttctctgtttct |
19067848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 19115517 - 19115738
Alignment:
| Q |
15 |
acatcatggtatatatgtcagtaagaaacaagtgcatcaagtttccgtnnnnnnntgtgcgttgtatccataagnnnnnnngtgtagataatgtgatgaa |
114 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||| |||||| |||| | | |||||||||| ||||||||||||||||||| |
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| T |
19115517 |
acattatggtatatatgtaagtaagaaacaagtgcatcaagcttccgtaaaagaatgtgtgctatatccataagaaaaaaagtgtagataatgtgatgaa |
19115616 |
T |
|
| Q |
115 |
aatacaagggtaaatagggaaaaagcaaaatgttcagccattctgtcctctttcttcgcatctatggagagaagataaattgtgcgaaccccacacaaat |
214 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| |
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| T |
19115617 |
aatacaagggtaaatagtgaaaaagcaaaatgttcagctattctctcctctttcttcgcatctatgcagagaagataaattgtgtggaccccacacaaat |
19115716 |
T |
|
| Q |
215 |
tcagtctctcttctttgtttct |
236 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
19115717 |
tcagtctctcttctctgtttct |
19115738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 38923611 - 38923388
Alignment:
| Q |
15 |
acatcatggtatatatgtcagtaagaaacaagtgcatcaagtttccgtnnnnnnntgtgcgttgtatccataagnnnnnnn--gtgtagataatgtgatg |
112 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||| |||| | | |||||||||| ||||||||||||||||| |
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| T |
38923611 |
acattatggtatatatgtaagtaagaaacaagtgcatcaagtttccgtaaaaaaatgtgtgctatatccataagaaaaaaaaagtgtagataatgtgatg |
38923512 |
T |
|
| Q |
113 |
aaaatacaagggtaaatagggaaaaagcaaaatgttcagccattctgtcctctttcttcgcatctatggagagaagataaattgtgcgaaccccacacaa |
212 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
38923511 |
aaaatacaagggtaaatagggaaaaagtaaaatgctcagccattctctcctctttcttcgcatctatggagagaagataaattgtgtggaccccacacaa |
38923412 |
T |
|
| Q |
213 |
attcagtctctcttctttgtttct |
236 |
Q |
| |
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||| |||||||||||| ||||||| |
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| T |
38923411 |
atttagtctctcttctctgtttct |
38923388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 48519054 - 48518831
Alignment:
| Q |
15 |
acatcatggtatatatgtcagtaagaaacaagtgcatcaagtttccgtnnnnnnn-tgtgcgttgtatccataagnnnnnnn-gtgtagataatgtgatg |
112 |
Q |
| |
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|||| ||||||||||||| | ||||||||||||||||||||||||||| |||| | | |||||||||| ||||||||||||||||| |
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| T |
48519054 |
acattatggtatatatgtaaataagaaacaagtgcatcaagtttccgtaaaaaaaatgtgtgctatatccataagaaaaaaaagtgtagataatgtgatg |
48518955 |
T |
|
| Q |
113 |
aaaatacaagggtaaatagggaaaaagcaaaatgttcagccattctgtcctctttcttcgcatctatggagagaagataaattgtgcgaaccccacacaa |
212 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||| || |
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| T |
48518954 |
aaaatacaagggtaaatagggaaaaagcaaaatgttcagccattctctcctctttcttcgcatctatggagagaagataaattgggtggaccccacataa |
48518855 |
T |
|
| Q |
213 |
attcagtctctcttctttgtttct |
236 |
Q |
| |
|
||| |||||||||||| ||||||| |
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|
| T |
48518854 |
atttagtctctcttctatgtttct |
48518831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 32277179 - 32277053
Alignment:
| Q |
102 |
ataatgtgatgaaaatacaagggtaaatagggaaaaagcaaaatgttcagccattctgtcctctttcttcgcatctatggagagaagataaattgtgcga |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
32277179 |
ataatgtgatgaaaatacaagggtaaatagggaaaaagcaaaatgttcagtcattctctcctctttcttcgcatctatggagagaagataaattgtgtgg |
32277080 |
T |
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| Q |
202 |
accccacacaaattcagtctctcttct |
228 |
Q |
| |
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| T |
32277079 |
actccacacaaatttagcctctcttct |
32277053 |
T |
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