View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_451 (Length: 247)
Name: NF10145A_low_451
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_451 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 40163575 - 40163809
Alignment:
| Q |
1 |
cgccactaacatagctcagcatcaaatcctctggccttttatcagcctccaggtcatccacatcaagggcttcttccaaagcctgagcctgactacgtgc |
100 |
Q |
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| T |
40163575 |
cgccactaacatagctcagcatcaaatcctctggccttttatcagcctccaggtcatccacatcaagggcttcttccaaagcctgagcctgactacgtgc |
40163674 |
T |
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| Q |
101 |
ttgttcagctttctctgttgacagatgcatgaagtgcttgatcacctcctccagtgagctaacattcacttgctgacatattatacgatactgaatgagg |
200 |
Q |
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| T |
40163675 |
ttgttcagctttctctgttgacagatgcatgaagtgcttgatcacctcctccagtgagctaacattcacttgctgacatattatacgatactgaatgagg |
40163774 |
T |
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| Q |
201 |
ccatccttagcaaatcggcctttcctcatgtcaac |
235 |
Q |
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| T |
40163775 |
ccatccttagcaaatcggcctttcctcatgtcaac |
40163809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 33949771 - 33949958
Alignment:
| Q |
27 |
tcctctggccttttatcagcctccaggtcatccacatcaagggcttcttccaaagcctgagcctgactacgtgcttgttcagctttctctgttgacagat |
126 |
Q |
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| T |
33949771 |
tcctctggccttttatccgcctctaagtcatcaacatcgagggcttgttccatttcccgagcctgactacaggctttttcagctttctccgttgacaggt |
33949870 |
T |
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| Q |
127 |
gcatgaagtgcttgatcacctcctccagtgagctaacattcacttgctgacatattatacgatactgaatgaggccatccttagcaaa |
214 |
Q |
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| T |
33949871 |
gaataaaacgcttaaccacctcctccagcgaaccaacattcacttgctgacatatgatccgataatgaatcaacccatccttcgcaaa |
33949958 |
T |
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