View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_454 (Length: 247)
Name: NF10145A_low_454
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_454 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 40971657 - 40971443
Alignment:
| Q |
13 |
aatatccaaggtactaggtcaaattaataaagaacgaaaaacatgttattctatgcagcaaactaatttggttgtataagttctgatagctatattaaaa |
112 |
Q |
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| T |
40971657 |
aatatccaaagtactaggtcaaattaataaagaacgaaaaacatgttattctatgcagcaaactaatttggttgtataagttctgatagctatattaaaa |
40971558 |
T |
|
| Q |
113 |
gtgtcgagtagatttgattgaatccttgaagacgtcgacatgatcttcaaattgatttaatatcctgtaacaaatatgaataattaattgcaagattata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40971557 |
gtgtcgagtagatttgattgaatccttgaagacgtcgacatgatcttcaaattgatttaatatcctgtaaaaaatatgaataattaattgcaagattata |
40971458 |
T |
|
| Q |
213 |
aacataaatatgtat |
227 |
Q |
| |
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||||||||||||||| |
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| T |
40971457 |
aacataaatatgtat |
40971443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 14269008 - 14268893
Alignment:
| Q |
108 |
taaaagtgtcgagtagatttgattgaatccttgaagacgtcgacatgatcttcaaattgatttaatatcctgtaacaaata---tgaataattaattgca |
204 |
Q |
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||||||||||||| || |||||||||||||| ||| | || | ||||||||||||||||||||||||||||||||||||| | |||||||||||| | |
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| T |
14269008 |
taaaagtgtcgagcagtcttgattgaatccttcaaggcatccaaatgatcttcaaattgatttaatatcctgtaacaaatatattaaataattaattgta |
14268909 |
T |
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| Q |
205 |
agattataaacataaa |
220 |
Q |
| |
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| T |
14268908 |
atattataaacataaa |
14268893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 40962475 - 40962279
Alignment:
| Q |
25 |
actaggtcaaattaataaagaacgaaaaacatgttattctatgcagcaaactaatttggttgtataagttctgatagctatattaaaagtgtcgagtaga |
124 |
Q |
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|||| |||| ||||||| ||||| ||||||||||| ||||||| ||||| ||||||| ||||| || |||| ||| ||||| ||||| || || |
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| T |
40962475 |
actaagtcacattaatagagaacaaaaaacatgtt---ctatgcaacaaaccaatttggggctataaattttgattactagattaagagtgtggaataat |
40962379 |
T |
|
| Q |
125 |
tttgattgaatccttgaagacgtcgacatgatcttcaaattgatttaatatcctgtaacaaata-tgaataattaattgcaagattataaacataaatat |
223 |
Q |
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|||||||||||||||||||| || | | ||||||||||||| || ||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |
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| T |
40962378 |
cttgattgaatccttgaagacatccaagtaatcttcaaattgaattgatatcctgtaacaaatattgaaaaattaattgtaagattataaatataaatat |
40962279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 40983559 - 40983465
Alignment:
| Q |
129 |
attgaatccttgaagacgtcgacatgatcttcaaattgatttaatatcctgtaacaaata-tgaataattaattgcaagattataaacataaatat |
223 |
Q |
| |
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||||||||||||||||| || | |||||||||||||||| ||||||||||||||| |||| |||||||| ||| | ||||||||||| |||||||| |
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| T |
40983559 |
attgaatccttgaagacttcaa-atgatcttcaaattgaattaatatcctgtaacgaatattgaataataaatcgtaagattataaaaataaatat |
40983465 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 20460777 - 20460911
Alignment:
| Q |
88 |
ataagttctgatagctatattaaaagtgtcgagtagatttgattgaatccttgaagacgtcgacatgatcttcaaattgatttaatatcctgtaacaaat |
187 |
Q |
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||||||| | ||| ||| |||||||||||||||||| |||||||||||||||||| | || | |||||||||||||||| ||||||||||||||||||| |
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| T |
20460777 |
ataagttttcataactagattaaaagtgtcgagtagtcttgattgaatccttgaaggcatccaaatgatcttcaaattgaattaatatcctgtaacaaat |
20460876 |
T |
|
| Q |
188 |
-atgaataattaattgcaagattataaacataaat |
221 |
Q |
| |
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||||||||||||| |||| ||||| ||||||| |
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| T |
20460877 |
gttgaataattaattttaagaatataagcataaat |
20460911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 20277539 - 20277631
Alignment:
| Q |
129 |
attgaatccttgaagacgtcgacatgatcttcaaattgatttaatatcctgtaacaaata-tgaataattaattgcaagattataaacataaat |
221 |
Q |
| |
|
||||||||||||||| | || | ||||||||||| |||| |||||||||||||||||||| ||||||||||||| ||||||||||| |||||| |
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| T |
20277539 |
attgaatccttgaaggcatccatatgatcttcaa-ttgaattaatatcctgtaacaaatattgaataattaattttaagattataaatataaat |
20277631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 20438581 - 20438715
Alignment:
| Q |
87 |
tataagttctgatagctatattaaaagtgtcgagtagatttgattgaatccttgaagacgtcgacatgatcttcaaattgatttaatatcctgtaacaaa |
186 |
Q |
| |
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|||||||| ||||| ||| |||||||||| ||||| | |||| |||||||| ||| | || | ||||||||||| ||| |||||||||||||| ||| |
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| T |
20438581 |
tataagttttgataactagattaaaagtgccgagtggtcttgactgaatcctcaaaggcatccatatgatcttcaa-ttgcattaatatcctgtaataaa |
20438679 |
T |
|
| Q |
187 |
tat-gaataattaattgcaagattataaacataaat |
221 |
Q |
| |
|
||| |||||||||||| ||||||||||| |||||| |
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|
| T |
20438680 |
tattgaataattaattttaagattataaatataaat |
20438715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 20442486 - 20442555
Alignment:
| Q |
152 |
atgatcttcaaattgatttaatatcctgtaacaaata-tgaataattaattgcaagattataaacataaat |
221 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||| ||||||||||||| || ||||||||||||||| |
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| T |
20442486 |
atgatcttcaa-ttgaattaatatcctgtaacaaatattgaataattaattttaaaattataaacataaat |
20442555 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 20430055 - 20430124
Alignment:
| Q |
152 |
atgatcttcaaattgatttaatatcctgtaacaaata-tgaataattaattgcaagattataaacataaat |
221 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||| |||||||||| || |||| ||||||||||||| |
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| T |
20430055 |
atgatcttcaa-ttgaattaatatcctgtaacaaatattgaataattatttttaagactataaacataaat |
20430124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 45486307 - 45486192
Alignment:
| Q |
108 |
taaaagtgtcgagtagatttgattgaatccttgaagacgtcgacatgatcttcaaattgatttaatatcctgtaacaaata---tgaataattaattgca |
204 |
Q |
| |
|
|||||||||| || || |||||||||||||| ||| | || | ||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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|
| T |
45486307 |
taaaagtgtccagcagtcttgattgaatccttcaaggcatccaaatgatcttcaaattgatttaatatcctgtaacaaatatattgaataattaattgta |
45486208 |
T |
|
| Q |
205 |
agattataaacataaa |
220 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
45486207 |
atattataaacataaa |
45486192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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