View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_459 (Length: 246)
Name: NF10145A_low_459
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_459 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 29613331 - 29613558
Alignment:
| Q |
1 |
acaaaagtcggtgacctcgtgagtttcaggactttcaaccagataactatcgacaacattctcccttggaagaagccaatgctccacatcattttcgtca |
100 |
Q |
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| T |
29613331 |
acaaaagtcggtgacctcgtgagtttcaggactttcaaccagataactatcgacaacattctcccttggaagaagccaatgctccacatcattttcgtca |
29613430 |
T |
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| Q |
101 |
aaatcaggcgcaacaataaattggctcaaataattcctaattaaccttgtaaccgcaggaacatcatggatttccatctttctaaaccctggtgtgactg |
200 |
Q |
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| T |
29613431 |
aaatcaggtgcaacaataaattggctcaaataattcctaattagccttgtaaccgcaggaacatcatggatttccatctttctaaaccctggtgtgactg |
29613530 |
T |
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| Q |
201 |
ttgattctggtagcttgtaaagtttgat |
228 |
Q |
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| T |
29613531 |
ttgattctggtagcttgtaaagtttgat |
29613558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 17552965 - 17553106
Alignment:
| Q |
24 |
tttcaggactttcaaccagataactatcgacaacattctcccttggaagaagccaatgctccacatcattttcgtcaaaatcaggcgcaacaataaattg |
123 |
Q |
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| T |
17552965 |
tttcaggactctcaaccaagtaactatccacaacatcctcatgtggaagcaaccaatgctcaacatcatcttcatcgaaatcaggcgcaacaacaaactg |
17553064 |
T |
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| Q |
124 |
gctcaaataattcctaattaaccttgtaaccgcaggaacatc |
165 |
Q |
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| T |
17553065 |
tcctaaataacccctaagcaacctcgtaactgcaggaacatc |
17553106 |
T |
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