View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_461 (Length: 246)

Name: NF10145A_low_461
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_461
NF10145A_low_461
[»] chr3 (11 HSPs)
chr3 (14-235)||(3472912-3473132)
chr3 (17-235)||(18539220-18539439)
chr3 (102-235)||(3586037-3586170)
chr3 (17-148)||(39728849-39728979)
chr3 (14-145)||(18694761-18694891)
chr3 (14-145)||(18710280-18710410)
chr3 (140-235)||(39728206-39728300)
chr3 (108-193)||(15778350-15778435)
chr3 (19-119)||(19595713-19595813)
chr3 (65-145)||(3289496-3289575)
chr3 (189-231)||(3475798-3475840)
[»] scaffold0281 (1 HSPs)
scaffold0281 (14-235)||(561-782)
[»] chr4 (13 HSPs)
chr4 (17-235)||(11150311-11150528)
chr4 (14-235)||(15703423-15703643)
chr4 (19-231)||(25127291-25127503)
chr4 (17-236)||(23972830-23973049)
chr4 (17-236)||(14644608-14644826)
chr4 (14-233)||(4529772-4529989)
chr4 (106-231)||(19612930-19613056)
chr4 (18-145)||(18875038-18875161)
chr4 (94-151)||(20770653-20770710)
chr4 (129-222)||(12385288-12385382)
chr4 (195-232)||(9565036-9565073)
chr4 (105-145)||(15691335-15691376)
chr4 (101-145)||(9609818-9609862)
[»] chr7 (12 HSPs)
chr7 (17-235)||(11509746-11509963)
chr7 (17-235)||(18148734-18148951)
chr7 (17-231)||(22530124-22530338)
chr7 (17-234)||(34705766-34705977)
chr7 (14-193)||(21860584-21860761)
chr7 (33-138)||(13694170-13694274)
chr7 (87-182)||(3377724-3377820)
chr7 (117-193)||(21501014-21501091)
chr7 (120-176)||(6019275-6019331)
chr7 (123-171)||(13386703-13386750)
chr7 (123-171)||(19193977-19194024)
chr7 (125-176)||(21498551-21498603)
[»] chr5 (7 HSPs)
chr5 (16-236)||(39437067-39437286)
chr5 (109-182)||(29497057-29497130)
chr5 (123-171)||(27273153-27273200)
chr5 (123-170)||(19049409-19049455)
chr5 (106-137)||(32039818-32039849)
chr5 (197-235)||(29497017-29497055)
chr5 (203-235)||(889872-889904)
[»] chr8 (8 HSPs)
chr8 (17-235)||(9882232-9882450)
chr8 (8-232)||(40387489-40387712)
chr8 (111-236)||(1216744-1216869)
chr8 (62-235)||(42145381-42145554)
chr8 (106-145)||(17289632-17289671)
chr8 (17-71)||(4860588-4860638)
chr8 (14-94)||(42145299-42145378)
chr8 (209-238)||(17289761-17289790)
[»] chr1 (10 HSPs)
chr1 (17-232)||(52272638-52272852)
chr1 (61-232)||(12785022-12785199)
chr1 (106-232)||(41138001-41138127)
chr1 (106-236)||(9132516-9132647)
chr1 (106-236)||(23633267-23633398)
chr1 (34-145)||(89878-89988)
chr1 (14-111)||(18514938-18515036)
chr1 (61-145)||(18249887-18249972)
chr1 (110-161)||(19474425-19474476)
chr1 (14-53)||(18249965-18250004)
[»] chr6 (10 HSPs)
chr6 (61-235)||(19770139-19770312)
chr6 (17-235)||(19891695-19891910)
chr6 (17-236)||(9547622-9547840)
chr6 (100-235)||(22468810-22468952)
chr6 (124-193)||(12876106-12876176)
chr6 (106-145)||(19565277-19565316)
chr6 (106-145)||(20738946-20738985)
chr6 (14-68)||(22468752-22468806)
chr6 (122-159)||(17729507-17729544)
chr6 (195-235)||(19565160-19565200)
[»] scaffold0005 (1 HSPs)
scaffold0005 (17-236)||(172466-172684)
[»] scaffold0024 (1 HSPs)
scaffold0024 (18-230)||(106674-106885)
[»] scaffold0323 (1 HSPs)
scaffold0323 (99-236)||(15300-15437)
[»] chr2 (12 HSPs)
chr2 (106-236)||(16092412-16092543)
chr2 (106-232)||(20264687-20264813)
chr2 (14-145)||(32625541-32625671)
chr2 (22-136)||(34892182-34892295)
chr2 (106-193)||(38991701-38991788)
chr2 (118-232)||(27401699-27401814)
chr2 (61-138)||(20178635-20178711)
chr2 (106-193)||(22385814-22385899)
chr2 (117-174)||(30613270-30613327)
chr2 (116-159)||(29890519-29890563)
chr2 (14-84)||(16092227-16092297)
chr2 (101-176)||(19467084-19467160)
[»] scaffold0498 (2 HSPs)
scaffold0498 (17-145)||(12012-12139)
scaffold0498 (141-231)||(9784-9875)
[»] scaffold0449 (1 HSPs)
scaffold0449 (151-235)||(344-429)
[»] scaffold0009 (1 HSPs)
scaffold0009 (86-145)||(221835-221894)
[»] scaffold0043 (2 HSPs)
scaffold0043 (106-178)||(66678-66752)
scaffold0043 (16-84)||(66953-67021)
[»] scaffold0196 (1 HSPs)
scaffold0196 (117-145)||(22871-22899)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 3473132 - 3472912
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 113  Q
    ||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| |||||| |||||||| | |||||||| ||||||||    
T  3473132 acatcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacatatcttc-aaatagacctacagttatgtatgcaatg 3473034  T
Q  114 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactg 213  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3473033 tctctaactcgactctatatgcatgttgtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactg 3472934  T
Q  214 accatgaatgcatgaacaccaa 235  Q
    ||||||||||||||||||||||    
T  3472933 accatgaatgcatgaacaccaa 3472912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 18539439 - 18539220
Alignment:
Q  17 tcattgaatatcacatctttaaa-taattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtc 115  Q
    |||||||||||| |||||||||| || ||||| |||||||| ||| ||||||||||||||||||||||| ||||| || | |||||||| ||||||||||    
T  18539439 tcattgaatatcgcatctttaaaatagttacagatcttaaagtattacatcttttaattacacatcttc-aaatatacctacagttatgtatgcaatgtc 18539341  T
Q  116 cctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactga 214  Q
     ||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||| |||||||||||| ||||| |||||||||||||||    
T  18539340 tctaactcgactctatatgcatgtggtaccggttttggattttagagttatcttactgatttatctcccatctttaaatcacatatttaaatcggactga 18539241  T
Q  215 ccatgaatgcatgaacaccaa 235  Q
     ||||||||||||||||||||    
T  18539240 acatgaatgcatgaacaccaa 18539220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 3586037 - 3586170
Alignment:
Q  102 atggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctt 201  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| ||| | ||||||||||||||||||    
T  3586037 atggatgcaatgtccctaactcgactctatatgcatgtagtaccgattttggatatcagagttatgttactgattaatctcgcatctttaaacacatctt 3586136  T
Q  202 taaatcggactgaccatgaatgcatgaacaccaa 235  Q
    ||||||||||||||||||||||||||||||||||    
T  3586137 taaatcggactgaccatgaatgcatgaacaccaa 3586170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 39728979 - 39728849
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||| |||||||||||||||||||| |||||||| | || ||||| ||||||||||     
T  39728979 tcattgaatatcacatctttaaatacgtacacatcttaaaatatcacttcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtct 39728881  T
Q  117 ctaactcgactctatatgcatgtggtaccggt 148  Q
    ||||||||||||||||||||||||||||||||    
T  39728880 ctaactcgactctatatgcatgtggtaccggt 39728849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 18694891 - 18694761
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 113  Q
    |||||||||||||||||||||||| ||| |||||  |||| || |  |||||||||||||||||||||||  || |||||||||||||||| ||||||||    
T  18694891 acatcattgaatatcacatctttacatatttacatgtctttaaatcacacatcttttaattacacatcttt-aagtagacttgcagttatgtatgcaatg 18694793  T
Q  114 tccctaactcgactctatatgcatgtggtacc 145  Q
    ||||||||||||||||||||||||||||||||    
T  18694792 tccctaactcgactctatatgcatgtggtacc 18694761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 18710410 - 18710280
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 113  Q
    |||||||||||||||||||||||| ||| |||||  |||| || |  |||||||||||||||||||||||  || |||||||||||||||| ||||||||    
T  18710410 acatcattgaatatcacatctttacatatttacatgtctttaaatcacacatcttttaattacacatcttt-aagtagacttgcagttatgtatgcaatg 18710312  T
Q  114 tccctaactcgactctatatgcatgtggtacc 145  Q
    ||||||||||||||||||||||||||||||||    
T  18710311 tccctaactcgactctatatgcatgtggtacc 18710280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 39728300 - 39728206
Alignment:
Q  140 ggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacaccaa 235  Q
    |||||||||||||||||||||| |||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39728300 ggtaccggttttggatatcagagttatga-actggtttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacaccaa 39728206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 15778435 - 15778350
Alignment:
Q  108 gcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 193  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||    
T  15778435 gcaatgtccctaactcgactctatatgcatgtggtactgattttggatatcagagttatgttactgatttatcccccatctttaaa 15778350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 19595713 - 19595813
Alignment:
Q  19 attgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccct 118  Q
    |||||||||| |||||||||||| ||| |||| || || ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  19595713 attgaatatcccatctttaaatagttatacatttttaaatatcacatcttttaattacacatcttcaaaatagacttgcagttatgtatgcaatgtccct 19595812  T
Q  119 a 119  Q
    |    
T  19595813 a 19595813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 3289496 - 3289575
Alignment:
Q  65 tcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtacc 145  Q
    ||||| ||| |||||||||| ||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||    
T  3289496 tctttaaatcacacatcttc-aaatagacttgtagttatgtatgcaatgtctctaactcgactctatatgcatgtggtacc 3289575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 3475798 - 3475840
Alignment:
Q  189 ttaaacacatctttaaatcggactgaccatgaatgcatgaaca 231  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  3475798 ttaaacacatctttaaatcggactgaccaagaatgcatgaaca 3475840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 561 - 782
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 113  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||||| |||||||| |||||||||| ||||||||    
T  561 acatcattgaatatcacatctttaaatatttacacatcttaaaatatcacatcttttaattatgcatcttc-aaatagacctgcagttatgtatgcaatg 659  T
Q  114 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggact 212  Q
    || |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  660 tctctaactcgactctatatgcatgtggtaccggttttggatatcagagatatgttactgatttatcccccatctttaaatcacatctttaaatcggact 759  T
Q  213 gaccatgaatgcatgaacaccaa 235  Q
    |||||||||||||||||||||||    
T  760 gaccatgaatgcatgaacaccaa 782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 11150311 - 11150528
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  11150311 tcattgaatatcacatatttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 11150409  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 216  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11150410 ctaactcgactctatatgcatgttgtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 11150509  T
Q  217 atgaatgcatgaacaccaa 235  Q
    |||||||||||||||||||    
T  11150510 atgaatgcatgaacaccaa 11150528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 15703423 - 15703643
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 113  Q
    ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | || ||||| ||||||||    
T  15703423 acatcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatg 15703521  T
Q  114 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactg 213  Q
    || ||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15703522 tctctaactcgactctatatacatgtggtaccgattttagatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactg 15703621  T
Q  214 accatgaatgcatgaacaccaa 235  Q
    ||||||||||||||||||||||    
T  15703622 accatgaatgcatgaacaccaa 15703643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 25127503 - 25127291
Alignment:
Q  19 attgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccct 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| ||    
T  25127503 attgaatatcacatctttaaatagttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctct 25127405  T
Q  119 aactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgacca 217  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25127404 aactcgactcaatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccccatctttaaatcacatctttaaatcggactgacca 25127305  T
Q  218 tgaatgcatgaaca 231  Q
    ||||||||||||||    
T  25127304 tgaatgcatgaaca 25127291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 23972830 - 23973049
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||     
T  23972830 tcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaatcacacatcttc-aaatagacctacagttatgtatgcaatgtct 23972928  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 215  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  23972929 ctaactcgactctatatgcatgtggtaccagttttggatatcagagttatgttactgaattatcccccatctttaaatcacatctttaaatcggactgac 23973028  T
Q  216 catgaatgcatgaacaccaaa 236  Q
    |||||||||||||||||||||    
T  23973029 catgaatgcatgaacaccaaa 23973049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 14644608 - 14644826
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    ||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||| | ||| |||||||| |  | ||||| ||| ||||||     
T  14644608 tcattgagtatcacatctttaaatagttacatatcgtaaaatatcacatcttttaattacaccttttc-aaatagacctataattatgtatgtaatgtct 14644706  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 216  Q
    |||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14644707 ctaactcgactctatatgcatgtgatatcggttttggatatcatagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 14644806  T
Q  217 atgaatgcatgaacaccaaa 236  Q
    ||||||||||||||||||||    
T  14644807 atgaatgcatgaacaccaaa 14644826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 4529772 - 4529989
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 113  Q
    |||||||||||||||||||||||||||| ||||| || || || || || ||  ||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  4529772 acatcattgaatatcacatctttaaatagttacatatttttaaataacaaattatttaattacacatcttc-aaatagacttgtagttatgtatgcaatg 4529870  T
Q  114 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactg 213  Q
    || |||||||| |||||||||||||||||| |  ||||||||||||||  |||||||||||||||| ||||||||| || ||||| |||||||| |||||    
T  4529871 tctctaactcggctctatatgcatgtggtaacatttttggatatcagaggtatgttactgatttat-ccccatcttaaatcacatatttaaatcagactg 4529969  T
Q  214 accatgaatgcatgaacacc 233  Q
    |||||||||||||| |||||    
T  4529970 accatgaatgcatggacacc 4529989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 19613056 - 19612930
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 204  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| |||| ||||||||||| |||||||||||    
T  19613056 atgcaatgtccctaactcgactctatatgcatgtggtactggtttcggatatcagagttatgttactgattaatcctccatctttaaatcacatctttaa 19612957  T
Q  205 atcggactgaccatgaatgcatgaaca 231  Q
    |||||||||||||||||||||||||||    
T  19612956 atcggactgaccatgaatgcatgaaca 19612930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 18875038 - 18875161
Alignment:
Q  18 cattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccc 117  Q
    |||| |||||| |||||||||||| ||||||||||| ||  |  ||||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||||    
T  18875038 cattaaatatctcatctttaaatagttacacatctttaaaaagaacatcttttaattacacatattc-atatagacttgcaattatgtatgcaatgtccc 18875136  T
Q  118 taactcgactctatatgcatgtggtacc 145  Q
    |||||||| ||||||  |||||||||||    
T  18875137 taactcga-tctata--catgtggtacc 18875161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 20770653 - 20770710
Alignment:
Q  94 ttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggtttt 151  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||    
T  20770653 ttgcagttatgtatgcgatgtacctaactcgactctatatgcatgtggtaccagtttt 20770710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 12385382 - 12385288
Alignment:
Q  129 tatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaat 222  Q
    |||||||||||||||    |||||||| || || | ||||||| || |||||||||||||| ||| |||||||| ||||  ||||||||||||||    
T  12385382 tatatgcatgtggtattaattttggatgtctgagtaatgttaccgagttatcccccatcttcaaatcacatcttcaaatgtgactgaccatgaat 12385288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 9565073 - 9565036
Alignment:
Q  195 acatctttaaatcggactgaccatgaatgcatgaacac 232  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  9565073 acatcgttaaataggactgaccatgaatgcatgaacac 9565036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 15691335 - 15691376
Alignment:
Q  105 gatgcaatgtcccta-actcgactctatatgcatgtggtacc 145  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  15691335 gatgcaatgtccctacactcgactatatatgcatgtggtacc 15691376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 9609818 - 9609862
Alignment:
Q  101 tatggatgcaatgtccctaactcgactctatatgcatgtggtacc 145  Q
    |||| ||| ||||| ||||||| ||||||||||||||||||||||    
T  9609818 tatgtatggaatgtacctaacttgactctatatgcatgtggtacc 9609862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 11509963 - 11509746
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||| |||||| | | |||||||| ||||||||||     
T  11509963 tcattgaatatcacatctttaaataggtacacatcttaatatatcacatcttttaattacacatcttc-aaatagtcatacagttatgtatgcaatgtct 11509865  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11509864 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttattgatttatcccccatctttaaacacatctttaaatcggactgacc 11509765  T
Q  217 atgaatgcatgaacaccaa 235  Q
    |||||||||||||||||||    
T  11509764 atgaatgcatgaacaccaa 11509746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 18148951 - 18148734
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | || ||||| ||||||||||     
T  18148951 tcattgaatatcacatctttaaatatgtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtct 18148853  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 216  Q
    |||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18148852 ctaactcgactctatatgcatgtggtaccggttttgaatatctgagttatgttactgatttatcccccatctttaaacacatctttaaatcagactgacc 18148753  T
Q  217 atgaatgcatgaacaccaa 235  Q
    |||||||||||||||||||    
T  18148752 atgaatgcatgaacaccaa 18148734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 22530338 - 22530124
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    ||||||||||| ||||||||||||| || ||||||||||| |||||| |||||||| ||||||||||| | |||||| | || ||||| ||||||||||     
T  22530338 tcattgaatattacatctttaaatagttgcacatcttaaaatatcacgtcttttaactacacatcttc-agatagacctacaattatgtatgcaatgtct 22530240  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  22530239 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccacatctttaaatcacatatttaaatcggactgac 22530140  T
Q  216 catgaatgcatgaaca 231  Q
    ||||||||| ||||||    
T  22530139 catgaatgcttgaaca 22530124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 34705766 - 34705977
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||| |||||||||||||||||| | ||||||| |||||| |||||||||||      |||||||||| |||||||| | |||||||| ||||||||||     
T  34705766 tcatcgaatatcacatctttaaacacttacacaacttaaaatatcacatctt------acacatcttc-aaatagacctacagttatgtatgcaatgtct 34705858  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 215  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  34705859 ctaactcaactctatctgcatgtggtaccggttttggatatcagagttatgttactgattaatcctccatctttaaatcacatctttaaatcggactgac 34705958  T
Q  216 catgaatgcatgaacacca 234  Q
    |||||||||||||||||||    
T  34705959 catgaatgcatgaacacca 34705977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 21860761 - 21860584
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 113  Q
    ||||||||||||||||| |||||||||| |||||||| || || ||  | |||||| |||||||||||||| ||||||||||||| ||||| ||||||||    
T  21860761 acatcattgaatatcacgtctttaaatagttacacatatttaaatagtatatctttaaattacacatcttc-aaatagacttgcaattatgtatgcaatg 21860663  T
Q  114 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 193  Q
    |||||||||||||| |||||| ||||| |||   ||||||||||||||  ||||||||||| ||||||||||||||||||    
T  21860662 tccctaactcgactatatatgaatgtgttactaattttggatatcagatgtatgttactga-ttatcccccatctttaaa 21860584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 13694170 - 13694274
Alignment:
Q  33 ctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctata 132  Q
    |||||||||| |||||||||| || |  ||| ||||||||| |||||||||| |||||||||||||  |||| |||||||||||||||||||| ||||||    
T  13694170 ctttaaataaatacacatctttaaatgacacgtcttttaatcacacatcttc-aaatagacttgcaaatatgtatgcaatgtccctaactcgattctata 13694268  T
Q  133 tgcatg 138  Q
    ||||||    
T  13694269 tgcatg 13694274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 3377724 - 3377820
Alignment:
Q  87 aatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccgg-ttttggatatcagaattatgttactgatttatccc 182  Q
    |||| |||||||| |||| ||||||||| ||||||||||||||||| ||| | |||||||| |||||||||||| | |||| ||| ||||| |||||    
T  3377724 aatacacttgcagatatgtatgcaatgtacctaactcgactctatacgcacgcggtaccggtttttggatatcatagttatattattgattaatccc 3377820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 21501091 - 21501014
Alignment:
Q  117 ctaactcgactctatatgcatgtggtacc-ggttttggatatcagaattatgttactgatttatcccccatctttaaa 193  Q
    |||| ||||||||||||||||||||||||  ||||| ||| || || ||||||||| |||| ||||  ||||||||||    
T  21501091 ctaattcgactctatatgcatgtggtaccaagttttagatgtcggagttatgttaccgattgatccttcatctttaaa 21501014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 6019331 - 6019275
Alignment:
Q  120 actcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatt 176  Q
    |||||| |||||||||||||||||||  |||||||| || || ||||||||| ||||    
T  6019331 actcgattctatatgcatgtggtaccatttttggatgtcggagttatgttaccgatt 6019275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 13386703 - 13386750
Alignment:
Q  123 cgactctatatgcatgtggtaccggttttggatatcagaattatgttac 171  Q
    ||||| ||||||| |||||||||| |||||||||||||| |||||||||    
T  13386703 cgactttatatgcttgtggtaccg-ttttggatatcagagttatgttac 13386750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 19194024 - 19193977
Alignment:
Q  123 cgactctatatgcatgtggtaccggttttggatatcagaattatgttac 171  Q
    |||||||||| ||||||||||||  |||||||||||||| |||||||||    
T  19194024 cgactctatacgcatgtggtacca-ttttggatatcagagttatgttac 19193977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 21498551 - 21498603
Alignment:
Q  125 actctatatgcatgtggtacc-ggttttggatatcagaattatgttactgatt 176  Q
    |||||||||||| |||||||| |||||| ||| ||||| ||||||||||||||    
T  21498551 actctatatgcacgtggtaccaggttttagatgtcagagttatgttactgatt 21498603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 39437286 - 39437067
Alignment:
Q  16 atcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtc 115  Q
    |||||||||||||  ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  39437286 atcattgaatatcgtatctttaaatagttacacattttaaaatatcacatcttttaattacacatcttc-aaatagacatgcagttatgtatgcaatgtc 39437188  T
Q  116 cctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgac 215  Q
     ||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39437187 tctaactcgactttatatgcatgtggtaccggttttggatattagagttatattactgatttatcccacatctttaaacacatctttaaatcggactgac 39437088  T
Q  216 catgaatgcatgaacaccaaa 236  Q
    |||||||||||||||||||||    
T  39437087 catgaatgcatgaacaccaaa 39437067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 29497130 - 29497057
Alignment:
Q  109 caatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatccc 182  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||  |||||||||||||||||||    
T  29497130 caatgtcgctaactcgactatatatgcatgtggtaccagttttgtatatcagaggtatgttactgatttatccc 29497057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 27273153 - 27273200
Alignment:
Q  123 cgactctatatgcatgtggtaccggttttggatatcagaattatgttac 171  Q
    ||||||||||||||||||||||| |||||||||||| || |||||||||    
T  27273153 cgactctatatgcatgtggtacc-gttttggatatcggagttatgttac 27273200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 19049409 - 19049455
Alignment:
Q  123 cgactctatatgcatgtggtaccggttttggatatcagaattatgtta 170  Q
    ||||||||||||||||||||||| |||||||||||| || ||||||||    
T  19049409 cgactctatatgcatgtggtacc-gttttggatatcggagttatgtta 19049455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 137
Target Start/End: Original strand, 32039818 - 32039849
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcat 137  Q
    ||||||||||||||||||||||||||||||||    
T  32039818 atgcaatgtccctaactcgactctatatgcat 32039849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 29497055 - 29497017
Alignment:
Q  197 atctttaaatcggactgaccatgaatgcatgaacaccaa 235  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  29497055 atctttaaattagactgaccatgaatgcatgaacaccaa 29497017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 889904 - 889872
Alignment:
Q  203 aaatcggactgaccatgaatgcatgaacaccaa 235  Q
    |||| ||||||||||||||||||||||||||||    
T  889904 aaataggactgaccatgaatgcatgaacaccaa 889872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 9882232 - 9882450
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    ||||||||||||||||||||||| | ||| |||||||||| ||||||||| ||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  9882232 tcattgaatatcacatctttaaacacttaaacatcttaaaatatcacatcatttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 9882330  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  9882331 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgattaatcccccatctttaaatcacatctttaaatcggactgac 9882430  T
Q  216 catgaatgcatgaacaccaa 235  Q
    ||||||||||||||||||||    
T  9882431 catgaatgcatgaacaccaa 9882450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 40387489 - 40387712
Alignment:
Q  8 agatggacatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggat 107  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| | |||||||| ||    
T  40387489 agatgcacgtcattgaatatcacatctttaaatagttacacatcttaaattatcagatcttttaattacacatcttc-aaatagacctacagttatgtat 40387587  T
Q  108 gcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaat 206  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||    
T  40387588 gcaatgtttctaactcgactctatatgcatgtggtaccagttttggatattagagttatgttactgatttat-ccccatctttaaatcacatctttaaat 40387686  T
Q  207 cggactgaccatgaatgcatgaacac 232  Q
    |||||| |||||||||||||||||||    
T  40387687 cggacttaccatgaatgcatgaacac 40387712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 1216744 - 1216869
Alignment:
Q  111 atgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcgga 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||    
T  1216744 atgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatcttattgatttatcccccatctttaaacacatgtttaaatcgga 1216843  T
Q  211 ctgaccatgaatgcatgaacaccaaa 236  Q
    || |||||||||||||||||||||||    
T  1216844 ctaaccatgaatgcatgaacaccaaa 1216869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 62 - 235
Target Start/End: Original strand, 42145381 - 42145554
Alignment:
Q  62 acatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcaga 161  Q
    |||||||||||| |||||| ||| ||||||| ||| ||||||  ||||||||||||||||||||||||||||||||||||||| | |||||||||||| |    
T  42145381 acatcttttaatcacacatattc-aaatagatttgtagttatatatgcaatgtccctaactcgactctatatgcatgtggtactgattttggatatcaaa 42145479  T
Q  162 attatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcatgaacaccaa 235  Q
      ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| |||||||||||||||||    
T  42145480 ggtatgttactgatttatctcccatctttaaatcacatcattaaatcggactgaccaagaatgcatgaacaccaa 42145554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 17289632 - 17289671
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtacc 145  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17289632 atgcaatgtccctaactcgactctatatgcatgtggtacc 17289671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 4860638 - 4860588
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatctttta 71  Q
    |||||||||||||||||||||||    ||||||||||||| ||||||||||||||    
T  4860638 tcattgaatatcacatctttaaa----tacacatcttaaaatatcacatctttta 4860588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 42145299 - 42145378
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagact 94  Q
    ||||||| || |||||| |||||||||| |||||||||||  | || |||| |||||||| |||||||||| |||||||||    
T  42145299 acatcatcgagtatcacgtctttaaatatttacacatctttgaataacacaacttttaatcacacatcttc-aaatagact 42145378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 17289761 - 17289790
Alignment:
Q  209 gactgaccatgaatgcatgaacaccaaact 238  Q
    ||||||||||||||||||||||||||||||    
T  17289761 gactgaccatgaatgcatgaacaccaaact 17289790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 52272638 - 52272852
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||  ||||||| || ||||||||||     
T  52272638 tcattgaatatcgcatctttaaatatttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagaactgcagttgtgtatgcaatgtct 52272736  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 216  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52272737 ctaactcgactctatatgcatgtggtatcggttttggatatcatagttatgttactgatttatcccacatctttaaacacatctttaaatcggactgacc 52272836  T
Q  217 atgaatgcatgaacac 232  Q
    ||||||||||||||||    
T  52272837 atgaatgcatgaacac 52272852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 61 - 232
Target Start/End: Original strand, 12785022 - 12785199
Alignment:
Q  61 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcag 160  Q
    |||||||||||||||||||||||| |||||||| | || ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12785022 cacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcag 12785120  T
Q  161 aa-------ttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacac 232  Q
    |        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12785121 atatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacac 12785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 41138127 - 41138001
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaa 205  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41138127 atgcaatgtccttaacttgactctatatgcatgtggtaccagttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaa 41138028  T
Q  206 tcggactgaccatgaatgcatgaacac 232  Q
    |||||||||||||||||||||||||||    
T  41138027 tcggactgaccatgaatgcatgaacac 41138001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 9132647 - 9132516
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  9132647 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaggtatgttactgatttatcccccatctttaaatcacatctttaa 9132548  T
Q  205 atcggactgaccatgaatgcatgaacaccaaa 236  Q
    |||||||| || ||||||||||||||||||||    
T  9132547 atcggactaactatgaatgcatgaacaccaaa 9132516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 23633398 - 23633267
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 204  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  23633398 atgcaatgtcactaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccccatctttaaatcacatctttaa 23633299  T
Q  205 atcggactgaccatgaatgcatgaacaccaaa 236  Q
    |||||||||||||||||| |||||||| ||||    
T  23633298 atcggactgaccatgaattcatgaacatcaaa 23633267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 89878 - 89988
Alignment:
Q  34 tttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatat 133  Q
    ||||||||||||||  |||| || |  ||||| |||||||||||||||||| || || ||||||||| ||| ||||||||||||||||||||||||||||    
T  89878 tttaaataattacatgtctttaaatcacacatgttttaattacacatcttc-aagtaaacttgcagtaatgtatgcaatgtccctaactcgactctatat 89976  T
Q  134 gcatgtggtacc 145  Q
    |||||| |||||    
T  89977 gcatgtagtacc 89988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 18515036 - 18514938
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatc-ttaaattat-cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaa 111  Q
    ||||||||||||||||||||||||||||||||||  || ||| ||  | || ||||||||||||||||||||| || |||||||||||||||| ||||||    
T  18515036 acatcattgaatatcacatctttaaataattacatgtctttacatcgtacatatcttttaattacacatcttc-aagtagacttgcagttatgtatgcaa 18514938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 18249972 - 18249887
Alignment:
Q  61 cacatcttttaattacacatcttcgaaatagacttgcagt--tatggatgcaatgtccctaactcgactctatatgcatgtggtacc 145  Q
    ||||||||| ||||| |||||||  ||||||||||| |||  |||| ||| ||||||| ||||||||||||||||||||||||||||    
T  18249972 cacatctttaaattaaacatctta-aaatagacttgtagtgttatgtatgtaatgtccttaactcgactctatatgcatgtggtacc 18249887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 19474476 - 19474425
Alignment:
Q  110 aatgtccctaactcgactctatatgcatgtggtaccggttttggatatcaga 161  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  19474476 aatgtccctaacttgactctatatgcatgtggtaccgtttttgaatatcaga 19474425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 18250004 - 18249965
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatctt 53  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  18250004 acatcaatgaatatcacatctttaaatagttacacatctt 18249965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 61 - 235
Target Start/End: Complemental strand, 19770312 - 19770139
Alignment:
Q  61 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcag 160  Q
    |||||||||||||||||||||||| |||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19770312 cacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcag 19770214  T
Q  161 aattatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacaccaa 235  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19770213 agttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacaccaa 19770139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 19891695 - 19891910
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||| |||||||||||||| |||||||| | || ||||| ||||||||||     
T  19891695 tcattgaatatcacatctttaaataggtacacatcttaaaatatcacatctttaaattacacatcttc-aaatagacctacacttatgtatgcaatgtct 19891793  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 216  Q
    |||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||| ||||||||||||| |||||| ||||| ||||||||     
T  19891794 ctaactcgactctatatgcatgtggtaccggttttggatat--gagttatgttactgatttataccccatctttaaatacatctctaaattggactgact 19891891  T
Q  217 atgaatgcatgaacaccaa 235  Q
    | |||||||||||||||||    
T  19891892 acgaatgcatgaacaccaa 19891910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 9547622 - 9547840
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    ||||||||||||||||||||||||| | ||||||||| ||  |||||||||| ||||||||||||||| |||||||| | |||||||| ||||||||||     
T  9547622 tcattgaatatcacatctttaaatagtcacacatcttgaaacatcacatcttataattacacatcttc-aaatagacctacagttatgtatgcaatgtct 9547720  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 215  Q
    |||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  9547721 ctaactcgactctacatgcatgtggtaccggttttggatatcaaagttatgttactgatttat-ccccatctttaaatcacatctttaaatcgaactgac 9547819  T
Q  216 catgaatgcatgaacaccaaa 236  Q
    |||| ||||||| ||| ||||    
T  9547820 catgcatgcatgtacatcaaa 9547840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 22468810 - 22468952
Alignment:
Q  100 ttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa------ 193  Q
    ||||| ||||||||| |||||||||||||||||||||||| ||||   ||||||||||||||  | |||||||||||||| |||||||||||||          
T  22468810 ttatgtatgcaatgttcctaactcgactctatatgcatgtagtacatattttggatatcagaggtgtgttactgatttat-ccccatctttaaatcttaa 22468908  T
Q  194 --cacatctttaaatcggactgaccatgaatgcatgaacaccaa 235  Q
       |||||||||||||||| ||||||||||||||||||||||||    
T  22468909 attacatctttaaatcggattgaccatgaatgcatgaacaccaa 22468952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 12876176 - 12876106
Alignment:
Q  124 gactctatatgcatgtggtaccg-gttttggatatcagaattatgttactgatttatcccccatctttaaa 193  Q
    ||||||||||| ||||||||||  ||||||||| ||||| ||||||||| || | ||||||||||||||||    
T  12876176 gactctatatgtatgtggtaccatgttttggatgtcagagttatgttaccgagtaatcccccatctttaaa 12876106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 19565316 - 19565277
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtacc 145  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  19565316 atgcaatgtctctaactcgaatctatatgcatgtggtacc 19565277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 20738985 - 20738946
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtacc 145  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  20738985 atgcaatgtgcctaactcggctctatatgcatgtggtacc 20738946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 22468752 - 22468806
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatctt 68  Q
    ||||||||||||| |||||||| ||||| ||||||||||| || || ||||||||    
T  22468752 acatcattgaataacacatcttaaaatagttacacatctttaaataacacatctt 22468806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 17729507 - 17729544
Alignment:
Q  122 tcgactctatatgcatgtggtaccggttttggatatca 159  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  17729507 tcgactatatatgcatgtggtaccgtttttggatatca 17729544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 19565200 - 19565160
Alignment:
Q  195 acatctttaaatcggactgaccatgaatgcatgaacaccaa 235  Q
    ||||| |||||| ||||||| ||||||||||||||||||||    
T  19565200 acatcgttaaataggactgagcatgaatgcatgaacaccaa 19565160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 172684 - 172466
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    ||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||| | ||| |||||||| |  | ||||| ||| ||||||     
T  172684 tcattgagtatcacatctttaaatagttacatatcgtaaaatatcacatcttttaattacaccttttc-aaatagacctataattatgtatgtaatgtct 172586  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 216  Q
    |||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172585 ctaactcgactctatatgcatgtgatatcggttttggatatcatagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 172486  T
Q  217 atgaatgcatgaacaccaaa 236  Q
    ||||||||||||||||||||    
T  172485 atgaatgcatgaacaccaaa 172466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 106674 - 106885
Alignment:
Q  18 cattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccc 117  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| |    
T  106674 cattgaatatcacatcttaaaataattacacttcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctc 106772  T
Q  118 taactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgacc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||| |||||||| |||||||||||||| | |||||     
T  106773 taactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttat-tcccgtctttaaatcacatctttaaatcagtctgact 106871  T
Q  217 atgaatgcatgaac 230  Q
    ||||||||||||||    
T  106872 atgaatgcatgaac 106885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 99 - 236
Target Start/End: Original strand, 15300 - 15437
Alignment:
Q  99 gttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacat 198  Q
    |||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15300 gttatgtaagcaatgtctctaactcgactctatatgcatgtagtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacat 15399  T
Q  199 ctttaaatcggactgaccatgaatgcatgaacaccaaa 236  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  15400 ctttaaatcggactgaccatgaatgcatgaacatcaaa 15437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 16092412 - 16092543
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 204  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  16092412 atgcaatgtccctaactcgactatatatgtatgtggtaccggttttgaatatcagagttatgttactgatttatcccccatctttaaatcacatctttaa 16092511  T
Q  205 atcggactgaccatgaatgcatgaacaccaaa 236  Q
    |||||||||| |||||||||||||||||||||    
T  16092512 atcggactgatcatgaatgcatgaacaccaaa 16092543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 20264813 - 20264687
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaa 205  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| | |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  20264813 atgcaatgtccctaactcgactctatatgcatgtggtacttgttttgaacatcagagttatgttactgatttatcccccagctttaaacacatctttaaa 20264714  T
Q  206 tcggactgaccatgaatgcatgaacac 232  Q
    |||||||||||||||||||||||||||    
T  20264713 tcggactgaccatgaatgcatgaacac 20264687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 32625671 - 32625541
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatctt-aaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaat 112  Q
    |||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  32625671 acataattgaatatcacatctttaaataattacacgtctttaaatta-cacatcttttaattacacatcttc-aagtagacttgcagttatgtatgcaat 32625574  T
Q  113 gtccctaactcgactctatatgcatgtggtacc 145  Q
    |||||||||||||||||||||||||||||||||    
T  32625573 gtccctaactcgactctatatgcatgtggtacc 32625541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 34892182 - 34892295
Alignment:
Q  22 gaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaac 121  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| |||||    
T  34892182 gaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctctaac 34892280  T
Q  122 tcgactctatatgca 136  Q
    |||||||||||||||    
T  34892281 tcgactctatatgca 34892295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 38991701 - 38991788
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  38991701 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaggtatgttactgatttatcctccatctttaaa 38991788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 27401814 - 27401699
Alignment:
Q  118 taactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgacc 216  Q
    |||||||||||||||||| |||| ||||| ||||||||||||||  |||| | ||||| ||| ||||||||||||| ||||||||||||||||||||| |    
T  27401814 taactcgactctatatgcttgtgataccgattttggatatcagaggtatgctcctgatgtattccccatctttaaatcacatctttaaatcggactgatc 27401715  T
Q  217 atgaatgcatgaacac 232  Q
    |||||| |||||||||    
T  27401714 atgaatacatgaacac 27401699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 20178635 - 20178711
Alignment:
Q  61 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatg 138  Q
    ||||||||||||| |||||||||| |||| ||| |||| ||||| |||||||||||||||||||||||||||||||||    
T  20178635 cacatcttttaatcacacatcttc-aaattgacatgcaattatgtatgcaatgtccctaactcgactctatatgcatg 20178711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 22385814 - 22385899
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 193  Q
    |||||||||  | ||||||||||||||  |||||| |||||||| |||||||||||  |||||||||||||||||| |||||||||||    
T  22385814 atgcaatgtttcaaactcgactctata--catgtgataccggttatggatatcagaggtatgttactgatttatcctccatctttaaa 22385899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 30613327 - 30613270
Alignment:
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactga 174  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||  |||||| ||||    
T  30613327 ctaactcgactttatatgcatgtggtaccttttttggatatcagaggtatgtttctga 30613270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 29890519 - 29890563
Alignment:
Q  116 cctaactcgactctatatgcatgtggtacc-ggttttggatatca 159  Q
    |||||||||||||||||||||||||||||| |||||| |||||||    
T  29890519 cctaactcgactctatatgcatgtggtaccaggttttagatatca 29890563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 16092227 - 16092297
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttc 84  Q
    |||||||| ||||||||||||| ||||| |||||| | || || || ||||||| |||||| |||||||||    
T  16092227 acatcattaaatatcacatcttaaaatagttacactttttcaaataacacatctattaattccacatcttc 16092297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 19467160 - 19467084
Alignment:
Q  101 tatggatgcaatgtccctaactcgactctatatgcatgtggtacc-ggttttggatatcagaattatgttactgatt 176  Q
    |||| ||||||||| |||||||| ||| || ||||||||||||||   ||||||||||||||  |||| ||||||||    
T  19467160 tatgtatgcaatgtacctaactcaactgtacatgcatgtggtaccaatttttggatatcagaggtatggtactgatt 19467084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 12012 - 12139
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||||||||  |||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  12012 tcattgaatgacacatccttaaatagttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 12110  T
Q  117 ctaactcgactctatatgcatgtggtacc 145  Q
    |||||||||||||||||||||||||||||    
T  12111 ctaactcgactctatatgcatgtggtacc 12139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 9784 - 9875
Alignment:
Q  141 gtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcatgaaca 231  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||    
T  9784 gtaccggttttgaatatcagagttatgttactgatttatcccccatctttaaatcatatctttagatcggaccgaccatgaatgcatgaaca 9875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 429 - 344
Alignment:
Q  151 tggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcatgaacaccaa 235  Q
    ||||||||| | ||||||||||||||||||| ||||||||||| |||||||||||||  |||||||||||||||||| || |||||    
T  429 tggatatcaaagttatgttactgatttatcctccatctttaaatcacatctttaaatatgactgaccatgaatgcattaaaaccaa 344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 221835 - 221894
Alignment:
Q  86 aaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtacc 145  Q
    ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  221835 aaatatacttgcagttatgtatgcaatgtcactaactcgactctatatgcatgtggtacc 221894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 66752 - 66678
Alignment:
Q  106 atgcaatgtccctaactcgactctatatg--catgtggtaccggttttggatatcagaattatgttactgattta 178  Q
    |||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||  ||||||  |||||||    
T  66752 atgcaatgtccctaactcgactctatatgcacatgtcgtaccggttttggatatcagaggtatgttgttgattta 66678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 67021 - 66953
Alignment:
Q  16 atcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttc 84  Q
    |||||||||||||||||||| ||||| |||||  |||| || || |||||| |||||||| ||| ||||    
T  67021 atcattgaatatcacatcttaaaatagttacatttctttaaataacacatcctttaattaaacagcttc 66953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 22871 - 22899
Alignment:
Q  117 ctaactcgactctatatgcatgtggtacc 145  Q
    |||||||||||||||||||||||||||||    
T  22871 ctaactcgactctatatgcatgtggtacc 22899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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