View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_464 (Length: 246)

Name: NF10145A_low_464
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_464
NF10145A_low_464
[»] chr4 (1 HSPs)
chr4 (1-203)||(56171801-56172005)
[»] chr2 (6 HSPs)
chr2 (1-127)||(17792480-17792605)
chr2 (74-139)||(15261474-15261539)
chr2 (40-105)||(20607340-20607405)
chr2 (40-158)||(27095680-27095798)
chr2 (40-157)||(44942261-44942378)
chr2 (66-151)||(27665601-27665686)
[»] chr7 (6 HSPs)
chr7 (41-155)||(39990203-39990316)
chr7 (62-126)||(43256599-43256663)
chr7 (51-107)||(4028207-4028264)
chr7 (40-148)||(36579340-36579448)
chr7 (40-158)||(28664940-28665058)
chr7 (38-99)||(5237988-5238050)
[»] chr1 (4 HSPs)
chr1 (51-140)||(31609735-31609823)
chr1 (50-105)||(31427182-31427237)
chr1 (51-151)||(18889058-18889158)
chr1 (54-105)||(38783096-38783147)
[»] chr3 (3 HSPs)
chr3 (40-134)||(5327512-5327606)
chr3 (40-140)||(4219175-4219273)
chr3 (40-155)||(31270304-31270419)
[»] chr6 (2 HSPs)
chr6 (74-149)||(15175797-15175872)
chr6 (74-149)||(15470296-15470371)
[»] chr8 (4 HSPs)
chr8 (67-147)||(10952323-10952403)
chr8 (67-147)||(10960328-10960408)
chr8 (52-139)||(19384338-19384425)
chr8 (113-154)||(17949123-17949165)
[»] chr5 (3 HSPs)
chr5 (40-99)||(374317-374376)
chr5 (50-98)||(26612049-26612097)
chr5 (40-124)||(39179856-39179939)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 56172005 - 56171801
Alignment:
Q  1 atcagaataaacaaagtcatgtgagatgacgagaacacaaaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaat 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  56172005 atcaaaataaacaaagtcatgtgagatgacgagaacacaaaaaacaagcaaaagaaaacttaaaatatgtgagaatcacttatttaactaaaagagaaat 56171906  T
Q  101 aaaaatacttcggaggggtgatttcaggtcaaaagtgacccaaaatcacccatc--tgacggatcaaggaaaagaaaagttgcaacagttaggatttgaa 198  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  56171905 aaaaatacttcggagggatgatttcaggtcaaaattgacccaaaatcacccatctttgatggatcaaggaaaagaaaagttgcaacagttaggatttgaa 56171806  T
Q  199 aaatg 203  Q
    |||||    
T  56171805 aaatg 56171801  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 17792605 - 17792480
Alignment:
Q  1 atcagaataaacaaagtcatgtgagatgacgagaacacaaaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaat 100  Q
    |||| ||||||||||||| ||  ||||||||| | |||||||| ||| | |||||||||| ||||||||||| ||||||||||||||||| ||||||||     
T  17792605 atcaaaataaacaaagtcgtgctagatgacgaaatcacaaaaa-caaacgaaagaaaactgaaaatatgtgaaaatcgcttatttaactagaagagaaag 17792507  T
Q  101 aaaaatacttcggaggggtgatttcag 127  Q
    ||||| | |  ||||||||||||||||    
T  17792506 aaaaacaatatggaggggtgatttcag 17792480  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 15261474 - 15261539
Alignment:
Q  74 aatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaagtgac 139  Q
    |||| |||||||| |||||||||||| ||||| | |||||| |||||||||| |||||||| ||||    
T  15261474 aatcacttatttagctaaaagagaaagaaaaacaattcggaagggtgatttcgggtcaaaattgac 15261539  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 20607340 - 20607405
Alignment:
Q  40 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaa 105  Q
    |||||||| | |||||||||| ||||||||||| |||| |||| |||||||||| ||||| |||||    
T  20607340 aaaaacaaacgaaagaaaactgaaaatatgtgaaaatcacttagttaactaaaaaagaaagaaaaa 20607405  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 27095798 - 27095680
Alignment:
Q  40 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttc-aggtcaaaagtga 138  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| || ||  | ||||  ||||| |  |||||||||||||||  ||||||||| |||    
T  27095798 aaaaacaaacgaaagaaaacaaaaaatatgtga-aatcacttattcaattaggatagaaggaaaaacaactcggaggggtgatttttaggtcaaaattga 27095700  T
Q  139 cccaaaatcacccatctgac 158  Q
    ||| ||||||||||||||||    
T  27095699 ccctaaatcacccatctgac 27095680  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 44942378 - 44942261
Alignment:
Q  40 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtga-tttcaggtcaaaagtga 138  Q
    |||||||| ||||||||||| |||||||||||| |||| |||||| || ||  | ||||  ||||| |  |||||||||||| |||  |||||||| |||    
T  44942378 aaaaacaaacaaaagaaaacataaaatatgtga-aatcacttattcaattaggatagaagaaaaaacaactcggaggggtgatttttgggtcaaaattga 44942280  T
Q  139 cccaaaatcacccatctga 157  Q
    ||  |||||||||||||||    
T  44942279 ccataaatcacccatctga 44942261  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 27665686 - 27665601
Alignment:
Q  66 tatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaagtgacccaaaatcaccc 151  Q
    ||||||| |||  ||||||||||||||||||||||||||| |  ||| |  |||||||| ||||||||| | | || |||||||||    
T  27665686 tatgtgaaaataacttatttaactaaaagagaaataaaaacaagtcgaattggtgattttaggtcaaaatttatcctaaatcaccc 27665601  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 39990203 - 39990316
Alignment:
Q  41 aaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaagtgacc 140  Q
    ||||||| | |||||||||| ||||||||||| |||| | ||||||||| |||||||||   ||| | ||||||| |||||||||| ||||||| |||||    
T  39990203 aaaacaaacgaaagaaaactgaaaatatgtgaaaatcacctatttaact-aaagagaaagttaaacaattcggagaggtgatttcatgtcaaaattgacc 39990301  T
Q  141 caaaatcacccatct 155  Q
    | |||||| ||||||    
T  39990302 ctaaatcatccatct 39990316  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 43256599 - 43256663
Alignment:
Q  62 aaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttca 126  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| | |||  || ||||||||||    
T  43256599 aaaatatgtgataatcacttatttaactaaaagagaaataaaaacaattcaaagtggtgatttca 43256663  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 4028264 - 4028207
Alignment:
Q  51 aaagaaaacttaaaatatgtgagaa-tcgcttatttaactaaaagagaaataaaaata 107  Q
    |||||||||||||||||| ||| || || ||||||||||||||||||||| |||||||    
T  4028264 aaagaaaacttaaaatatatgaaaaatcacttatttaactaaaagagaaagaaaaata 4028207  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 36579340 - 36579448
Alignment:
Q  40 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtga-tttcaggtcaaaagtga 138  Q
    |||||||| |||||||||||  |||||||||| ||||| |||||| |||||  | ||||  ||||| | ||||||||||||| |||| |||||||| |||    
T  36579340 aaaaacaaacaaaagaaaacaaaaaatatgtg-gaatcacttattcaactaggatagaaggaaaaacaattcggaggggtgattttcgggtcaaaattga 36579438  T
Q  139 cccaaaatca 148  Q
    ||| ||||||    
T  36579439 ccctaaatca 36579448  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 28664940 - 28665058
Alignment:
Q  40 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaagtga 138  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| || ||  | ||||  ||||| |  ||||||||||||||| ||| |||||| |||    
T  28664940 aaaaacaaacgaaagaaaacagaaaatatgtga-aatcacttattcaattaggatagaaggaaaaacaactcggaggggtgattttagggtcaaaattga 28665038  T
Q  139 cccaaaatcacccatctgac 158  Q
    ||| ||||||||||||||||    
T  28665039 ccctaaatcacccatctgac 28665058  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 5238050 - 5237988
Alignment:
Q  38 caaaaaacaagcaaaagaaaacttaaaatatgtgagaa-tcgcttatttaactaaaagagaaa 99  Q
    |||||||| | |||||||||| | ||||||||||| || || |||||||||||||||||||||    
T  5238050 caaaaaaccaacaaaagaaaattgaaaatatgtgaaaaatctcttatttaactaaaagagaaa 5237988  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 31609823 - 31609735
Alignment:
Q  51 aaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaagtgacc 140  Q
    |||||||||| |||| |||||| |||| || ||| |||||||||||||||||||| | || |||||||||||| |||||||||| |||||    
T  31609823 aaagaaaactaaaaaaatgtga-aatcactcattaaactaaaagagaaataaaaacaatttggaggggtgattgcaggtcaaaattgacc 31609735  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 31427182 - 31427237
Alignment:
Q  50 aaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaa 105  Q
    ||||||||||||||||||||||| |||  ||||||| |||||||||||||| ||||    
T  31427182 aaaagaaaacttaaaatatgtgaaaataacttattttactaaaagagaaattaaaa 31427237  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 18889158 - 18889058
Alignment:
Q  51 aaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaagtgacccaaaatcacc 150  Q
    |||||||| | ||| ||||||| ||||  ||||||  |||||||||||||||||| | ||| ||||||||||||  || ||||| |||| | ||||||||    
T  18889158 aaagaaaattgaaagtatgtgaaaatcatttattttgctaaaagagaaataaaaacaattcagaggggtgattttcggccaaaattgactctaaatcacc 18889059  T
Q  151 c 151  Q
    |    
T  18889058 c 18889058  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 38783147 - 38783096
Alignment:
Q  54 gaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaa 105  Q
    ||||||| ||||||||| | |||| ||||||||||||||||||||| |||||    
T  38783147 gaaaactgaaaatatgttaaaatcacttatttaactaaaagagaaagaaaaa 38783096  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 5327512 - 5327606
Alignment:
Q  40 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaa 134  Q
    |||||||| | |||||||||| ||||| ||||| |||| ||||||||||| ||||||||| ||||| | || | ||||||||||| | |||||||    
T  5327512 aaaaacaaacgaaagaaaactgaaaatttgtgataatcacttatttaactgaaagagaaagaaaaacaatttgcaggggtgattttaagtcaaaa 5327606  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 4219273 - 4219175
Alignment:
Q  40 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaaga--gaaataaaaatacttcggaggggtgatttcaggtcaaaagtg 137  Q
    |||||||| | |||||||||| ||||||||||| |||| |||||||||||||| ||  |||||| ||    |||||| | ||||||||||||||||| ||    
T  4219273 aaaaacaaacgaaagaaaactgaaaatatgtgaaaatcacttatttaactaaaggaaggaaatacaa----ttcggatgagtgatttcaggtcaaaattg 4219178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 31270419 - 31270304
Alignment:
Q  40 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaagtga 138  Q
    |||||||| | ||||||||| |||||||||||| |||| |||||| || ||  | ||||  ||||||| |||| |||||||||||  || |||||| |||    
T  31270419 aaaaacaaacgaaagaaaacataaaatatgtga-aatcacttattcaattaggatagaaggaaaaataattcgaaggggtgatttttgggtcaaaattga 31270321  T
Q  139 cccaaaatcacccatct 155  Q
    ||| |||||||||||||    
T  31270320 ccctaaatcacccatct 31270304  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 15175872 - 15175797
Alignment:
Q  74 aatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaagtgacccaaaatcac 149  Q
    |||| ||||||||| ||||| ||||| ||||| | ||||||||||||||||  |||||||| ||||| ||||||||    
T  15175872 aatcacttatttaagtaaaatagaaagaaaaacatttcggaggggtgattttgggtcaaaattgaccgaaaatcac 15175797  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 15470296 - 15470371
Alignment:
Q  74 aatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaagtgacccaaaatcac 149  Q
    |||| ||||||||| ||||| ||||| ||||| | ||| ||||||||||||  |||||||| ||||| ||||||||    
T  15470296 aatcacttatttaagtaaaatagaaagaaaaacatttcagaggggtgattttgggtcaaaattgaccaaaaatcac 15470371  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 10952323 - 10952403
Alignment:
Q  67 atgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaagtgacccaaaatc 147  Q
    |||||| |||| ||||||||||||||||| ||| ||||||| || | |||||||||||||  |||| | |||||| |||||    
T  10952323 atgtgaaaatcacttatttaactaaaagaaaaagaaaaataatttgaaggggtgatttcaaatcaatattgaccctaaatc 10952403  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 10960328 - 10960408
Alignment:
Q  67 atgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaagtgacccaaaatc 147  Q
    |||||| |||| ||||||||||||||||| ||| ||||||| || | |||||||||||||  |||| | |||||| |||||    
T  10960328 atgtgaaaatcacttatttaactaaaagaaaaagaaaaataatttgaaggggtgatttcaaatcaatattgaccctaaatc 10960408  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 19384425 - 19384338
Alignment:
Q  52 aagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaagtgac 139  Q
    |||||| || ||||||||||| |||  ||| ||||||||||||||||| ||||| | |||| |||||| ||||  |||||||| ||||    
T  19384425 aagaaagctgaaaatatgtgaaaattacttgtttaactaaaagagaaagaaaaacatttcgaaggggttattttgggtcaaaattgac 19384338  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 17949165 - 17949123
Alignment:
Q  113 gaggggtgatttcaggtcaa-aagtgacccaaaatcacccatc 154  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  17949165 gaggggtgatttcaggtcaataattgacccaaaatcacccatc 17949123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 374376 - 374317
Alignment:
Q  40 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaa 99  Q
    |||||||| ||||| |||||| |||||| |||| ||||  ||||||||||||||||||||    
T  374376 aaaaacaaacaaaataaaactgaaaatacgtgaaaatcatttatttaactaaaagagaaa 374317  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 26612097 - 26612049
Alignment:
Q  50 aaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaa 98  Q
    ||||||||||| ||| ||||||| |||| | ||||||||||||||||||    
T  26612097 aaaagaaaactaaaagtatgtgaaaatcacgtatttaactaaaagagaa 26612049  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 39179856 - 39179939
Alignment:
Q  40 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgattt 124  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| || || || ||||  ||||||| ||||||||||||||||    
T  39179856 aaaaacaaacgaaagaaaacagaaaatatgtga-aatcacttattcaattagaatagaaggaaaaataattcggaggggtgattt 39179939  T

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