View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_465 (Length: 246)
Name: NF10145A_low_465
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_465 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 56507726 - 56507958
Alignment:
| Q |
15 |
gggagccatatcttgacccaagccgaaacaggaaattagtnnnnnnnnnnnngt-gaattatctcactatgagcaaaccaaatatctcgtttgctgtcag |
113 |
Q |
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| T |
56507726 |
gggagccatatcttgaccgaagccgaaacaggaaattagtaaaaaaaaaaaaattgaattatctcactatgagcaaaccaaatatctcgtttgctgtcag |
56507825 |
T |
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| Q |
114 |
tattgcgaatcaatttctaaattcactttgtaatagccattggaatacagtagattagatcctgagggatatcaagagatcacctaggaaagggtttatt |
213 |
Q |
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| T |
56507826 |
tattgcgaatcaatttctaaattcactttgtaatagccattggaatacagtggattagatcctgaggtatatcaagagatcacctaggaaagggtttatt |
56507925 |
T |
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| Q |
214 |
tatacagattgaggtcatgccaatattcttgga |
246 |
Q |
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| T |
56507926 |
tatacagattgaggtcatgccaatattgttgga |
56507958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 33834437 - 33834528
Alignment:
| Q |
68 |
tgaattatctcactatgagcaaaccaaatatctcgtttgctgtcagtattgcgaatcaatttctaaattcactttgtaatagccattggaat |
159 |
Q |
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| T |
33834437 |
tgaattatcttactatgactagaccagatatttcgtttgctgttagtgttgtgagtcaatttttgaactcaccttgtgatagccattggaat |
33834528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 37917316 - 37917225
Alignment:
| Q |
68 |
tgaattatctcactatgagcaaaccaaatatctcgtttgctgtcagtattgcgaatcaatttctaaattcactttgtaatagccattggaat |
159 |
Q |
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| T |
37917316 |
tgaattatcttactatgactagaccagatatttcgtttgctgttagtgttgtgagtcaatttttgaactcaccttgtgatagccattggaat |
37917225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 246
Target Start/End: Complemental strand, 23298867 - 23298737
Alignment:
| Q |
116 |
ttgcgaatcaatttctaaattcactttgtaatagccattggaatacagtagattagatcctgagggatatcaagagatcacctaggaaagggtttattta |
215 |
Q |
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| T |
23298867 |
ttgcgagtcaatttctaaactgggcttgtaatagccattggaatgcagtggttcggatcttaaggtatattaaaaggccacctaggaaatggtttgttta |
23298768 |
T |
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| Q |
216 |
tacagattgaggtcatgccaatattcttgga |
246 |
Q |
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| T |
23298767 |
tacagaatgaggtaatagcaatattgttgga |
23298737 |
T |
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