View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_468 (Length: 245)

Name: NF10145A_low_468
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_468
NF10145A_low_468
[»] scaffold0461 (1 HSPs)
scaffold0461 (12-240)||(12223-12456)
[»] chr1 (4 HSPs)
chr1 (12-159)||(90993-91141)
chr1 (162-240)||(34392659-34392737)
chr1 (163-234)||(45499434-45499505)
chr1 (139-202)||(40390022-40390084)
[»] scaffold0004 (3 HSPs)
scaffold0004 (163-234)||(110217-110288)
scaffold0004 (166-235)||(72982-73051)
scaffold0004 (163-240)||(75829-75906)
[»] chr7 (10 HSPs)
chr7 (162-240)||(8930848-8930926)
chr7 (162-242)||(33556185-33556265)
chr7 (165-240)||(25943163-25943237)
chr7 (163-235)||(15700821-15700892)
chr7 (163-235)||(13744595-13744667)
chr7 (161-232)||(36300729-36300800)
chr7 (162-240)||(18570539-18570616)
chr7 (76-161)||(11508777-11508863)
chr7 (139-209)||(16250340-16250409)
chr7 (85-154)||(3387270-3387340)
[»] chr6 (3 HSPs)
chr6 (162-240)||(1818845-1818923)
chr6 (162-235)||(10446105-10446181)
chr6 (85-200)||(3851134-3851248)
[»] chr8 (6 HSPs)
chr8 (162-235)||(36732570-36732643)
chr8 (163-235)||(36305898-36305970)
chr8 (162-240)||(23884062-23884140)
chr8 (162-240)||(22610347-22610425)
chr8 (140-202)||(22966683-22966744)
chr8 (164-202)||(21697578-21697616)
[»] scaffold0031 (1 HSPs)
scaffold0031 (162-240)||(127426-127504)
[»] chr4 (4 HSPs)
chr4 (162-240)||(9622380-9622458)
chr4 (88-202)||(15239935-15240049)
chr4 (139-202)||(3838002-3838064)
chr4 (101-202)||(20150658-20150759)
[»] chr5 (5 HSPs)
chr5 (163-227)||(1627012-1627076)
chr5 (163-240)||(21398728-21398805)
chr5 (163-240)||(22111871-22111947)
chr5 (101-202)||(24068062-24068163)
chr5 (164-240)||(21504034-21504110)
[»] chr2 (3 HSPs)
chr2 (85-240)||(34491326-34491480)
chr2 (163-240)||(25584194-25584272)
chr2 (193-235)||(28345073-28345115)
[»] scaffold0120 (1 HSPs)
scaffold0120 (101-202)||(29144-29245)
[»] chr3 (9 HSPs)
chr3 (162-240)||(3527237-3527314)
chr3 (183-234)||(22841372-22841423)
chr3 (169-240)||(12155106-12155179)
chr3 (163-205)||(24177885-24177927)
chr3 (85-159)||(9733690-9733766)
chr3 (170-233)||(3160715-3160777)
chr3 (169-240)||(12151029-12151099)
chr3 (164-240)||(48631227-48631302)
chr3 (101-191)||(49968989-49969078)
[»] scaffold0174 (1 HSPs)
scaffold0174 (164-240)||(19750-19825)
[»] scaffold0379 (1 HSPs)
scaffold0379 (163-240)||(10841-10917)
[»] scaffold0247 (1 HSPs)
scaffold0247 (163-240)||(970-1046)
[»] scaffold0021 (2 HSPs)
scaffold0021 (170-242)||(17008-17079)
scaffold0021 (170-242)||(26539-26610)
[»] scaffold1939 (1 HSPs)
scaffold1939 (183-240)||(41-98)
[»] scaffold0009 (1 HSPs)
scaffold0009 (101-161)||(160391-160452)


Alignment Details
Target: scaffold0461 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 12223 - 12456
Alignment:
Q  12 agaagtatatatcattccacaaaataaaatttcagcaatataaaa----gaaaacaaatttaacaaagtcatcaattgaataagaaaataaccaaaatta 107  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12223 agaagtatatatcatgccacaaaataaaatttcagcaatataaaaaaaagaaaacaaatttaacaaagtcatcaattgaataagaaaataaccaaaatta 12322  T
Q  108 acaacccttaactacc-acatgagtacatattccttacgatgaataaaactcccctccttacgttaattcaatgatttacctactctttcaacaatcaat 206  Q
    ||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12323 acaacccttcactacccacatgagtacatatcccttacgatgaataaaactcccctccttacgttaattcaatgatttacctactctttcaacaatcaat 12422  T
Q  207 tttgcaaataaaccctaatttctataacaccaaa 240  Q
    ||||||||||||||||||||||||||||| ||||    
T  12423 tttgcaaataaaccctaatttctataacatcaaa 12456  T

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Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 90993 - 91141
Alignment:
Q  12 agaagtatatatcattccacaaaataaaatttcagcaatataaaagaaaacaaatttaacaaagtcatcaattgaataagaaaataaccaaaattaacaa 111  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  90993 agaagtatatatcatgccactaaataaaatttcagcaatataaaagaaaacaaatttaacaaagtcatcaattgaataaggaaacaaccaaaattaacaa 91092  T
Q  112 cccttaacta-ccacatgagtacatattccttacgatgaataaaactcc 159  Q
    ||||| |||| |||||||||||||||| |||||||||||||||||||||    
T  91093 cccttcactacccacatgagtacatatcccttacgatgaataaaactcc 91141  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 34392659 - 34392737
Alignment:
Q  162 tccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||    
T  34392659 tccttacgttaattcaatggattacctactctttcaacaatcaattttgcaatttaaccctaatttctataacatcaaa 34392737  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 45499434 - 45499505
Alignment:
Q  163 ccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataac 234  Q
    ||||||||||| |||||  |||||||||||||||||||||||| ||||||| | ||||||||||||||||||    
T  45499434 ccttacgttaaatcaatagtttacctactctttcaacaatcaactttgcaatttaaccctaatttctataac 45499505  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 40390022 - 40390084
Alignment:
Q  139 ccttacgatgaataaaactcccctccttacgttaattcaatgatttacctactctttcaacaat 202  Q
    ||||| ||||||| |||||| || | |||||||||||||||| |||||||||||||||||||||    
T  40390022 ccttatgatgaatgaaactctccac-ttacgttaattcaatggtttacctactctttcaacaat 40390084  T

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Target: scaffold0004 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 110217 - 110288
Alignment:
Q  163 ccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataac 234  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  110217 ccttacgttaattcaatggtttacctactctttcaataatcaattttgcaaataaaccctaatttctataac 110288  T

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Target: scaffold0004; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 72982 - 73051
Alignment:
Q  166 tacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataaca 235  Q
    |||||||||||||||  ||||||||||||||||||||||| ||||||||| ||||||||||  |||||||    
T  72982 tacgttaattcaatggcttacctactctttcaacaatcaactttgcaaattaaccctaattcttataaca 73051  T

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Target: scaffold0004; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 75829 - 75906
Alignment:
Q  163 ccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    ||||||||||| |||||  |||||||||||||||||||||||| ||||||||| | ||||||||  ||||||| ||||    
T  75829 ccttacgttaactcaatagtttacctactctttcaacaatcaactttgcaaattatccctaattcttataacatcaaa 75906  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 8930926 - 8930848
Alignment:
Q  162 tccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  8930926 tcctttcgttaattcaatggtttacctactctttcaacaatcaattttgcaaattaaccctaatttctataacatcaaa 8930848  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 33556265 - 33556185
Alignment:
Q  162 tccttacgttaattcaatg-atttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaact 242  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| ||||||    
T  33556265 tccttacgttaattcaatggatttacctactctttcaacaatcaatttttc-aattaaccctaatttctataacatcaaact 33556185  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 25943163 - 25943237
Alignment:
Q  165 ttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||    
T  25943163 ttacattaattcaatggtttacctactctttcaacaatcaattttgc-aattaaccctaatttctataacatcaaa 25943237  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 15700892 - 15700821
Alignment:
Q  163 ccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataaca 235  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  15700892 ccttacgttaattcaatagtttacctactctttcaacaaccaattttgc-aattaaccctaatttctataaca 15700821  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 13744667 - 13744595
Alignment:
Q  163 ccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataaca 235  Q
    ||||||||||| |||||  ||||||| |||||||||| ||||| ||||||||| |||||||||||||||||||    
T  13744667 ccttacgttaaatcaatagtttaccttctctttcaacgatcaactttgcaaattaaccctaatttctataaca 13744595  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 36300800 - 36300729
Alignment:
Q  161 ctccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctata 232  Q
    ||||||||||||||||||||  |||||||||||||||||| | |||||||||| | |||||||||| |||||    
T  36300800 ctccttacgttaattcaatggattacctactctttcaacagttaattttgcaatttaaccctaattcctata 36300729  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 18570539 - 18570616
Alignment:
Q  162 tccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| | ||||| |||| ||| |||||||||| ||||    
T  18570539 tccttacgttaattcaatggtt-acctactctttcaacaatcaattctacaaattaaccataacttctataacatcaaa 18570616  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 11508863 - 11508777
Alignment:
Q  76 tcatcaattgaataagaaaataaccaaaattaacaacccttaacta-ccacatgagtacatattccttacgatgaataaaactcccc 161  Q
    |||||||  ||||||||||||||  |||||||||||||||| |||| |||||||| |||| |  |||||| ||||||||||||||||    
T  11508863 tcatcaaaggaataagaaaataatgaaaattaacaacccttcactatccacatgattacacaacccttacaatgaataaaactcccc 11508777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 16250409 - 16250340
Alignment:
Q  139 ccttacgatgaataaa-actcccctccttacgttaattcaatgatttacctactctttcaacaatcaatttt 209  Q
    ||||| |||||||| | ||||||| |||||||||||||||||| || |||||||||||||||||||||||||    
T  16250409 ccttatgatgaatagagactcccc-ccttacgttaattcaatggtt-acctactctttcaacaatcaatttt 16250340  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 3387270 - 3387340
Alignment:
Q  85 gaataagaaaataaccaaaattaacaacccttaacta-ccacatgagtacatattccttacgatgaataaa 154  Q
    ||||||| |||||| |||| |||||||||||| |||| ||||||||||||| |  ||||| ||||||||||    
T  3387270 gaataaggaaataatcaaatttaacaacccttcactacccacatgagtacacaacccttatgatgaataaa 3387340  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 1818845 - 1818923
Alignment:
Q  162 tccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||    
T  1818845 tccttacgttaattcaatgaattacctactctttcaacaatcaattttgcaatttaaccctaatttctataacatcaaa 1818923  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 10446105 - 10446181
Alignment:
Q  162 tccttacgttaattcaatgatttacctact---ctttcaacaatcaattttgcaaataaaccctaatttctataaca 235  Q
    ||||||||||||||||||| ||||||||||   |||||||||||||||||||||||| |||||||||||||||||||    
T  10446105 tccttacgttaattcaatgctttacctactgatctttcaacaatcaattttgcaaattaaccctaatttctataaca 10446181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 3851248 - 3851134
Alignment:
Q  85 gaataagaaaataaccaaaattaacaacccttaactacc-acatgagtacatattccttacgatgaataaaactcccctccttacgttaattcaatgatt 183  Q
    ||||||| ||||||  ||| ||||||||| || |||||| ||||||||||| |  ||||| ||||||||||||| ||| || ||||||||||||||| ||    
T  3851248 gaataaggaaataatgaaatttaacaacctttcactacccacatgagtacacaa-ccttatgatgaataaaacttccc-ccatacgttaattcaatggtt 3851151  T
Q  184 tacctactctttcaaca 200  Q
    |||||||||||||||||    
T  3851150 tacctactctttcaaca 3851134  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 36732643 - 36732570
Alignment:
Q  162 tccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataaca 235  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  36732643 tccttacgttaattcaatggtttacctactctttcaacaatcaattttgcaaattaaccctaatttcaataaca 36732570  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 36305898 - 36305970
Alignment:
Q  163 ccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataaca 235  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  36305898 ccttacgttaattcaatggtttacctactctttcaacaatcaactttgcaaattaaccctaatttctataaca 36305970  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 23884062 - 23884140
Alignment:
Q  162 tccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || || | ||||||||||||||||||| ||||    
T  23884062 tccttacgttaattcaatgatttacctactctttcaacaatcaattgtgtaatttaaccctaatttctataacatcaaa 23884140  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 22610425 - 22610347
Alignment:
Q  162 tccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| ||||| |||| |||||||||||||| ||||    
T  22610425 tccttacgttaattcaatggattacctactctttcaacaatcaattttacaaattaaccataatttctataacatcaaa 22610347  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 22966683 - 22966744
Alignment:
Q  140 cttacgatgaataaaactcccctccttacgttaattcaatgatttacctactctttcaacaat 202  Q
    |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  22966683 cttacggtgaataaaactccccac-ttacgttaattcaatgatttacctactctttcaacaat 22966744  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 21697616 - 21697578
Alignment:
Q  164 cttacgttaattcaatgatttacctactctttcaacaat 202  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  21697616 cttacgttaattcaatggtttacctactctttcaacaat 21697578  T

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Target: scaffold0031 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 127504 - 127426
Alignment:
Q  162 tccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||| ||||||||| ||||    
T  127504 tccttacgttaattcaatggtttacctactctttcaacaatcaattttgcaaagtaaccctaatctctataacatcaaa 127426  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 9622380 - 9622458
Alignment:
Q  162 tccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||    
T  9622380 tccttacgttaattcaatggattacctactctttcaacaatcaattttgcaatttaaccctaatttctataacatcaaa 9622458  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 15240049 - 15239935
Alignment:
Q  88 taagaaaataaccaaaattaacaacccttaactac-cacatgagtacatattccttacgatgaataaaactcccctccttacgttaattcaatgatttac 186  Q
    |||||||| |||  ||||||||||||||| ||||| |||||||| ||| |  ||||| ||||||||||||||||| |||||||||||||||||| |||||    
T  15240049 taagaaaacaacagaaattaacaacccttcactacacacatgagcacacaacccttatgatgaataaaactcccc-ccttacgttaattcaatggtttac 15239951  T
Q  187 ctactctttcaacaat 202  Q
    ||||| ||||||||||    
T  15239950 ctactttttcaacaat 15239935  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 3838002 - 3838064
Alignment:
Q  139 ccttacgatgaataaaactcccctccttacgttaattcaatgatttacctactctttcaacaat 202  Q
    ||||| ||||||| ||||||||| | |||||||||||||||| |||||||||||||||||||||    
T  3838002 ccttatgatgaatgaaactccccac-ttacgttaattcaatggtttacctactctttcaacaat 3838064  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 20150658 - 20150759
Alignment:
Q  101 aaaattaacaacccttaactacc-acatgagtacatattccttacgatgaataaaactcccctccttacgttaattcaatgatttacctactctttcaac 199  Q
    |||||||||||||| | |||||| ||| | ||||| |  ||||| ||||||| |||||| || | |||||||||||||||| ||||||||||||||||||    
T  20150658 aaaattaacaacccatcactacccacacgcgtacacaacccttatgatgaatgaaactctccac-ttacgttaattcaatggtttacctactctttcaac 20150756  T
Q  200 aat 202  Q
    |||    
T  20150757 aat 20150759  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 1627076 - 1627012
Alignment:
Q  163 ccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaattt 227  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  1627076 ccttacgttaattcaatggtttacctactctttcaacaatcaattttgcaaataaactctaattt 1627012  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 21398805 - 21398728
Alignment:
Q  163 ccttacgttaattcaatg-atttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||    
T  21398805 ccttacgttaattcaatggatttacctactctttcaacaaccaattttgc-aattaaccctaatttctataacatcaaa 21398728  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 22111871 - 22111947
Alignment:
Q  163 ccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    |||||||||||||| ||  |||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||    
T  22111871 ccttacgttaattcgattgtttacctactctttcaacaaccaattttgc-aattaaccctaatttctataacatcaaa 22111947  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 24068062 - 24068163
Alignment:
Q  101 aaaattaacaacccttaactacc-acatgagtacatattccttacgatgaataaaactcccctccttacgttaattcaatgatttacctactctttcaac 199  Q
    |||||||||||||||| |||||| ||| | ||||| |  ||||| ||||||| ||||||||| | |||||||||||||||| |||||||||| |||||||    
T  24068062 aaaattaacaacccttcactacccacacgcgtacacaacccttatgatgaatgaaactccccac-ttacgttaattcaatggtttacctactttttcaac 24068160  T
Q  200 aat 202  Q
    |||    
T  24068161 aat 24068163  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 21504034 - 21504110
Alignment:
Q  164 cttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaa-taaaccctaatttctataacaccaaa 240  Q
    |||| ||||||||| ||  | |||||||||||||||||| || |||||||| | ||||||||||||||||||| ||||    
T  21504034 cttatgttaattcattggatcacctactctttcaacaatgaa-tttgcaaatttaaccctaatttctataacatcaaa 21504110  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 240
Target Start/End: Complemental strand, 34491480 - 34491326
Alignment:
Q  85 gaataagaaaataaccaaaattaacaacccttaactacc-acatgagtacatattccttacgatgaataaaactcccctccttacgttaattcaatg-at 182  Q
    ||||||||||| ||| ||||||||||| |||| || ||| |||||||||| ||   |||| |||||||||||||| ||  ||||||||||||||||| ||    
T  34491480 gaataagaaaacaacaaaaattaacaatccttcacaacccacatgagtacgtaactcttatgatgaataaaactctcc--cttacgttaattcaatggat 34491383  T
Q  183 ttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    |||| |||||||| ||||||||||||||| ||| |||||||| || ||||||| ||||    
T  34491382 ttacttactcttttaacaatcaattttgc-aattaaccctaaattttataacatcaaa 34491326  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 25584272 - 25584194
Alignment:
Q  163 ccttacgttaattcaatga-tttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    |||||||||||||| || | |||||||||||||||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  25584272 ccttacgttaattcgataaatttacctactctttcaacaatcaattctacaaattaaccctaatttctataacatcaaa 25584194  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 28345115 - 28345073
Alignment:
Q  193 tttcaacaatcaattttgcaaataaaccctaatttctataaca 235  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  28345115 tttcaacaatcaattttgcaaattaaccctaatttctataaca 28345073  T

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Target: scaffold0120 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 29144 - 29245
Alignment:
Q  101 aaaattaacaacccttaactacc-acatgagtacatattccttacgatgaataaaactcccctccttacgttaattcaatgatttacctactctttcaac 199  Q
    |||||||| ||||||| |||||| |||||| |||| |  ||||||| ||||||||||||||| | |||||||||||||||| ||||||||||||||||||    
T  29144 aaaattaaaaacccttcactacccacatgattacacaacccttacgctgaataaaactccccac-ttacgttaattcaatggtttacctactctttcaac 29242  T
Q  200 aat 202  Q
    |||    
T  29243 aat 29245  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 3527314 - 3527237
Alignment:
Q  162 tccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    |||||||||||||||||||  ||||||||||||||||||||||| | | ||||| ||||||||||||||||||| ||||    
T  3527314 tccttacgttaattcaatggcttacctactctttcaacaatcaa-tctacaaattaaccctaatttctataacatcaaa 3527237  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 22841423 - 22841372
Alignment:
Q  183 ttacctactctttcaacaatcaattttgcaaataaaccctaatttctataac 234  Q
    ||||||||||||||||||||||||| | ||||| ||||||||||||||||||    
T  22841423 ttacctactctttcaacaatcaattctacaaattaaccctaatttctataac 22841372  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 12155179 - 12155106
Alignment:
Q  169 gttaattcaatgatttacctactctttcaacaatcaatt--ttgcaaataaaccctaatttctataacaccaaa 240  Q
    ||||||||| ||  |||||||| ||||||||||||||||  |||||||| |||||||| |||||||||| ||||    
T  12155179 gttaattcattgggttacctacactttcaacaatcaattaattgcaaattaaccctaacttctataacatcaaa 12155106  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 24177927 - 24177885
Alignment:
Q  163 ccttacgttaattcaatgatttacctactctttcaacaatcaa 205  Q
    |||||||||||||||||| ||| ||||||||||||||||||||    
T  24177927 ccttacgttaattcaatggtttgcctactctttcaacaatcaa 24177885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 9733766 - 9733690
Alignment:
Q  85 gaataagaaaataacc-aaaattaacaacccttaacta-ccacatgagtacatattccttacgatgaataaaactcc 159  Q
    ||||||||||||||   |||||||||||||||| |||| ||||||||||||| |  |||||| ||||||||||||||    
T  9733766 gaataagaaaataaatgaaaattaacaacccttcactatccacatgagtacacaacccttacaatgaataaaactcc 9733690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 3160777 - 3160715
Alignment:
Q  170 ttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataa 233  Q
    |||||||| ||| |||||||||||||||||||||||  |||||| | || ||||||||||||||    
T  3160777 ttaattcattgaattacctactctttcaacaatcaa-attgcaatttaaacctaatttctataa 3160715  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 12151099 - 12151029
Alignment:
Q  169 gttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    ||||||||| ||  |||||||| |||||||||||||| |||| |||| |||||||| |||||||||| ||||    
T  12151099 gttaattcattgggttacctacactttcaacaatcaa-tttgaaaattaaccctaacttctataacatcaaa 12151029  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 48631227 - 48631302
Alignment:
Q  164 cttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    |||| ||||||||| ||| |||||||| |||||||||||||| || |||| | |||||| | |||||||||| ||||    
T  48631227 cttatgttaattcattgaattacctacactttcaacaatcaa-ttagcaatttaaccctgacttctataacatcaaa 48631302  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 49969078 - 49968989
Alignment:
Q  101 aaaattaacaacccttaactacc-acatgagtacatattccttacgatgaataaaactcccctccttacgttaattcaatgatttacctact 191  Q
    ||||||||||||| || |||||| ||| ||||||| |  ||||| |||||||||||| ||||  ||||| |||||||||||| ||| |||||    
T  49969078 aaaattaacaacctttcactacccacacgagtacacaacccttatgatgaataaaacccccc--cttacattaattcaatgaattagctact 49968989  T

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Target: scaffold0174 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 19750 - 19825
Alignment:
Q  164 cttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    |||||||||| | |||| |||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||    
T  19750 cttacgttaacttaatggtttacctactctttcaacaaccaattttgc-aattaaccctaatttctataacatcaaa 19825  T

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Target: scaffold0379 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 10841 - 10917
Alignment:
Q  163 ccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    |||||| ||||||||||  |||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||| ||||    
T  10841 ccttacattaattcaatagtttacctactttttcaacaaccaattttgc-aattaaccctaatttctataacatcaaa 10917  T

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Target: scaffold0247 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 970 - 1046
Alignment:
Q  163 ccttacgttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    |||||||||||||| || ||||||||||| ||| ||||||||||||||| ||| |||| ||||||||| |||| ||||    
T  970 ccttacgttaattcgataatttacctactattttaacaatcaattttgc-aattaaccataatttctaaaacatcaaa 1046  T

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Target: scaffold0021 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 17008 - 17079
Alignment:
Q  170 ttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaact 242  Q
    |||||||| ||  |||||||||||||||||||||||  |||||||| || |||||||||||||| | ||||||    
T  17008 ttaattcattggattacctactctttcaacaatcaa-attgcaaattaaacctaatttctataatatcaaact 17079  T

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Target: scaffold0021; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 26539 - 26610
Alignment:
Q  170 ttaattcaatgatttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaact 242  Q
    |||||||| ||  |||||||||||||||||||||||  |||||||| || |||||||||||||| | ||||||    
T  26539 ttaattcattggattacctactctttcaacaatcaa-attgcaaattaaacctaatttctataatatcaaact 26610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1939 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1939
Description:

Target: scaffold1939; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 41 - 98
Alignment:
Q  183 ttacctactctttcaacaatcaattttgcaaataaaccctaatttctataacaccaaa 240  Q
    |||||||||||||||||||||||||||  |  | |||||||| |||||||||| ||||    
T  41 ttacctactctttcaacaatcaattttcaattttaaccctaacttctataacatcaaa 98  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 160391 - 160452
Alignment:
Q  101 aaaattaacaacccttaactacc-acatgagtacatattccttacgatgaataaaactcccc 161  Q
    |||||||||||||||| |||||| ||||||||| | |  ||||| |||||||||||||||||    
T  160391 aaaattaacaacccttcactacccacatgagtaaacaacccttatgatgaataaaactcccc 160452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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