View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_472 (Length: 245)
Name: NF10145A_low_472
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_472 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 37 - 230
Target Start/End: Original strand, 19307946 - 19308139
Alignment:
| Q |
37 |
tcataaatctcataaagtttcggcgaaagttttgagacacttttccttgattccgagacttcaacggttgttcatgtgttcaaagacggctagcttatta |
136 |
Q |
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| T |
19307946 |
tcataaatctcataaagtttcggcgaaagttttgagacactttcccttgattccgagacttcaacggttgttcatgtgttcaaagacggctagctcatta |
19308045 |
T |
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| Q |
137 |
agttggcatgacagagatcgtttagatgatggaaagttgaggcatcctgcagatggagaggcatgaaaagaatttgataaatgtcatcctgaat |
230 |
Q |
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| T |
19308046 |
agttggcatgacagagatcgtttagatgatgggaagttgaggcatcctgcagatggagaggcatggaaagaatttgataaatgtcatcctgaat |
19308139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 16733821 - 16733767
Alignment:
| Q |
69 |
tgagacacttttccttgattccgagacttcaacggttgttcatgtgttcaaagac |
123 |
Q |
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| T |
16733821 |
tgagacactttcccttgattcctaggcttcagaggttgtttatgtgttcaaagac |
16733767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 95 - 230
Target Start/End: Original strand, 13248411 - 13248546
Alignment:
| Q |
95 |
cttcaacggttgttcatgtgttcaaagacggctagcttattaagttggcatgacagagatcgtttagatgatggaaagttgaggcatcctgcagatggag |
194 |
Q |
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| T |
13248411 |
cttcaacggttgttcatgtgttcaacgacagctagctcattaagttggcatgacaaagatcgattgaatgatgggaagttgaagaatcctgtagatggag |
13248510 |
T |
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| Q |
195 |
aggcatgaaaagaatttgataaatgtcatcctgaat |
230 |
Q |
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| T |
13248511 |
aggcatggaaagaatttgataaatgtcatcctgaat |
13248546 |
T |
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