View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_477 (Length: 244)
Name: NF10145A_low_477
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_477 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 50580331 - 50580468
Alignment:
| Q |
87 |
attatactacataccttgtttgttctaaagctggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctt |
186 |
Q |
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| T |
50580331 |
attatactacataccttgtttgttctaaaggtggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctt |
50580430 |
T |
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| Q |
187 |
tgtaaaagaccaatgtcttcttcattccaaccaactcc |
224 |
Q |
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| T |
50580431 |
tgtaaaagaccaatgtcttcttcattccaaccaactcc |
50580468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 11462908 - 11462987
Alignment:
| Q |
138 |
tattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaac |
217 |
Q |
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| T |
11462908 |
tattcatgcattacccaattacttttctctcctttaggtgctcttcctttgtagaaaacaagagttttcttcattccaac |
11462987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 217
Target Start/End: Complemental strand, 1059453 - 1059333
Alignment:
| Q |
97 |
ataccttgtttgttctaaagctggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagac |
196 |
Q |
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| T |
1059453 |
ataccttgttggttctaatactggatttggaatggatacggtattcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaac |
1059354 |
T |
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| Q |
197 |
caatgtcttcttcattccaac |
217 |
Q |
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| T |
1059353 |
caaagtcttcttcataccaac |
1059333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 45059076 - 45058993
Alignment:
| Q |
138 |
tattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaaccaac |
221 |
Q |
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| T |
45059076 |
tattcatgcatgacccaattacttttttctcctttaggtgctcttcctttgtagaaaacaagagttttcttcataccaaccaac |
45058993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 3893451 - 3893374
Alignment:
| Q |
139 |
attcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaa |
216 |
Q |
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| T |
3893451 |
attcatgcatgacccaatttgttttttcacctttaggagctcttcctttgtagaaaacaagtgttttcttcattccaa |
3893374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 10317623 - 10317671
Alignment:
| Q |
139 |
attcatgcatgacccaattacttttctctcctcgaggagctctgccttt |
187 |
Q |
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| T |
10317623 |
attcatgcatgacccaattggttttctctcctcttggagctctaccttt |
10317671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 31606022 - 31606050
Alignment:
| Q |
138 |
tattcatgcatgacccaattacttttctc |
166 |
Q |
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| T |
31606022 |
tattcatgcatgacccaattacttttctc |
31606050 |
T |
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