View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_480 (Length: 244)

Name: NF10145A_low_480
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_480
NF10145A_low_480
[»] chr7 (9 HSPs)
chr7 (14-224)||(33902202-33902412)
chr7 (103-211)||(24211326-24211434)
chr7 (73-211)||(46603696-46603832)
chr7 (118-211)||(9603484-9603577)
chr7 (118-211)||(9831055-9831148)
chr7 (118-200)||(4040862-4040948)
chr7 (114-174)||(45996484-45996544)
chr7 (103-147)||(3399435-3399479)
chr7 (132-204)||(30003801-30003873)
[»] scaffold0192 (1 HSPs)
scaffold0192 (73-211)||(13360-13498)
[»] chr8 (6 HSPs)
chr8 (73-211)||(25267030-25267168)
chr8 (101-211)||(2233868-2233978)
chr8 (103-211)||(32162764-32162870)
chr8 (104-211)||(39907939-39908046)
chr8 (104-165)||(17072689-17072750)
chr8 (104-165)||(17575521-17575582)
[»] chr3 (16 HSPs)
chr3 (74-211)||(41242179-41242316)
chr3 (114-211)||(16041133-16041230)
chr3 (114-211)||(16053073-16053170)
chr3 (73-211)||(11076939-11077076)
chr3 (114-211)||(16037577-16037674)
chr3 (103-203)||(17517888-17517988)
chr3 (74-200)||(37820798-37820924)
chr3 (114-211)||(39933347-39933443)
chr3 (109-208)||(9821003-9821102)
chr3 (103-211)||(28389387-28389501)
chr3 (73-211)||(31229723-31229861)
chr3 (107-211)||(5050593-5050697)
chr3 (103-140)||(34730789-34730826)
chr3 (103-191)||(50744732-50744820)
chr3 (103-140)||(34870135-34870172)
chr3 (156-212)||(6276753-6276809)
[»] chr6 (6 HSPs)
chr6 (103-211)||(12185707-12185815)
chr6 (104-211)||(9456209-9456316)
chr6 (103-211)||(3441218-3441326)
chr6 (103-211)||(10068183-10068289)
chr6 (103-195)||(25070402-25070494)
chr6 (163-212)||(10483415-10483464)
[»] chr4 (8 HSPs)
chr4 (104-211)||(3067606-3067713)
chr4 (104-211)||(5050426-5050533)
chr4 (115-203)||(4059118-4059206)
chr4 (105-177)||(31040283-31040356)
chr4 (103-194)||(43967986-43968077)
chr4 (109-211)||(18371146-18371248)
chr4 (107-177)||(36622116-36622186)
chr4 (103-211)||(45891795-45891904)
[»] chr1 (7 HSPs)
chr1 (103-211)||(25808484-25808592)
chr1 (75-211)||(46298512-46298648)
chr1 (103-211)||(31501054-31501162)
chr1 (104-186)||(19339915-19339997)
chr1 (103-210)||(49423341-49423448)
chr1 (103-211)||(23392714-23392823)
chr1 (132-211)||(51540737-51540817)
[»] chr2 (4 HSPs)
chr2 (108-211)||(2126184-2126287)
chr2 (104-193)||(11152190-11152279)
chr2 (106-168)||(22348730-22348792)
chr2 (106-177)||(22345686-22345757)
[»] chr5 (5 HSPs)
chr5 (105-211)||(35075847-35075954)
chr5 (114-199)||(31559096-31559181)
chr5 (103-156)||(5150835-5150888)
chr5 (103-210)||(10020725-10020829)
chr5 (150-211)||(7802030-7802090)
[»] scaffold0402 (1 HSPs)
scaffold0402 (104-186)||(2978-3060)
[»] scaffold1786 (1 HSPs)
scaffold1786 (103-211)||(365-473)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 33902412 - 33902202
Alignment:
Q  14 acatcaaaaagttgattctacttggatttatttcaacacaccatataagaatacgatgagaaatgctaacttatgtcctgaaagcaaaggttaagaaatt 113  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||| |||||| ||||| ||||| |||||    
T  33902412 acatcaaaaagttgattctacttgcatttatttcaacacaccatacaagaatccaatgagaaatgctaacttatgccctgaaggcaaaagttaaaaaatt 33902313  T
Q  114 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccatttttcg 213  Q
    ||||||| ||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||    
T  33902312 aaagatagaaatattttattgaaaattatgcatttaatattttagaaatttaaaatcttatcttttcaagacataatttataatttaattccatttttcg 33902213  T
Q  214 gatattattgg 224  Q
     ||||| ||||    
T  33902212 aatatttttgg 33902202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 24211434 - 24211326
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 202  Q
    |||||||||| ||||||| ||||||||||||||||||| || ||||||||||  |||||||  |||| | ||||| |||| |||||||||||||||||||    
T  24211434 gttaagaaatcaaagatagaaatattttgttggaaattgtgtattcaatattcaagaaattggaaatctaatcttttcaaaacataatttatgatttaat 24211335  T
Q  203 tccattttt 211  Q
    || ||||||    
T  24211334 tctattttt 24211326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 46603696 - 46603832
Alignment:
Q  73 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 172  Q
    ||||||||||||| || ||| || ||||| ||||||||| |||||||| |||  |||| ||||||||| ||||||  || ||||||||||||||||| ||    
T  46603696 gaaatgctaacttgtgcccttaaggcaaaagttaagaaactaaagatagaaactttttattggaaattgtgcatttcatgttttagaaatttaaaatctt 46603795  T
Q  173 atcttatcaagacataatttatgatttaattccattttt 211  Q
    ||||| |||||||  |||||||  |||||||||||||||    
T  46603796 atcttttcaagac--aatttatattttaattccattttt 46603832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 9603484 - 9603577
Alignment:
Q  118 ataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 211  Q
    ||||||||||||| ||| ||||||||||||  || ||||||||||||||||| ||||||| |||| |||  ||||||| |||||||| ||||||    
T  9603484 ataaaaatattttattgaaaattatgcatttcatgttttagaaatttaaaatcttatcttttcaaaacaatatttatgttttaattctattttt 9603577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 9831055 - 9831148
Alignment:
Q  118 ataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 211  Q
    ||||||||||||| ||| ||||||||||||  || ||||||||||||||||| ||||||| |||| |||  ||||||| |||||||| ||||||    
T  9831055 ataaaaatattttattgaaaattatgcatttcatgttttagaaatttaaaatcttatcttttcaaaacaatatttatgttttaattctattttt 9831148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 4040862 - 4040948
Alignment:
Q  118 ataaaaatattttgttggaaattatgcattcaat----attttagaaatttaaaattttatcttatcaagacataatttatgattta 200  Q
    ||||||| ||||||||||||||| ||||||||||    ||| ||||| |||||||| ||||||| |||||||| |||||||||||||    
T  4040862 ataaaaacattttgttggaaattgtgcattcaatcaatattctagaattttaaaatattatcttttcaagacaaaatttatgattta 4040948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 45996484 - 45996544
Alignment:
Q  114 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttat 174  Q
    ||||||||||||||||| ||| ||||| || ||| |||||| || ||||||||||||||||    
T  45996484 aaagataaaaatattttattgtaaattgtgtatttaatattctaaaaatttaaaattttat 45996544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 3399479 - 3399435
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcatt 147  Q
    |||||||||||||| |||||| | |||||||||||||| ||||||    
T  3399479 gttaagaaattaaatataaaagttttttgttggaaattttgcatt 3399435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 30003801 - 30003873
Alignment:
Q  132 ttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattc 204  Q
    |||||||||||| ||||||||| ||| ||| ||||||  |||| || |||| ||| |||||||| ||||||||    
T  30003801 ttggaaattatgtattcaatatcttaaaaagttaaaaacttattttttcaatacaaaatttatgttttaattc 30003873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 13360 - 13498
Alignment:
Q  73 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 172  Q
    |||||| |||||| ||| || || ||| | |||||||||  ||||||| ||| ||||||||||||||| ||||||||||||| |||||||||||||| ||    
T  13360 gaaatgttaacttgtgttctcaaggcacaagttaagaaagcaaagatagaaacattttgttggaaattgtgcattcaatattctagaaatttaaaatctt 13459  T
Q  173 atcttatcaagacataatttatgatttaattccattttt 211  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  13460 atcttttcaagacataatttatgatttaattgcattttt 13498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 25267168 - 25267030
Alignment:
Q  73 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 172  Q
    |||||| |||||| || ||| |||||| | |||||||||  ||||||| ||| ||||||||||||||| ||||||| ||||| |||||||||||||| ||    
T  25267168 gaaatgttaacttctgccctcaaagcataagttaagaaaccaaagatagaaacattttgttggaaattgtgcattcgatattatagaaatttaaaatctt 25267069  T
Q  173 atcttatcaagacataatttatgatttaattccattttt 211  Q
    ||| | |||||||||||||||||||||||||||||||||    
T  25267068 atcatttcaagacataatttatgatttaattccattttt 25267030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 2233978 - 2233868
Alignment:
Q  101 aggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgattta 200  Q
    ||||||| |||  |||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| ||| |||||||||||||    
T  2233978 aggttaaaaaaccaaagataaaagtattttgttggaaattatgcattcaatattctaaaaatttaaaattttatcttttcaaaacaaaatttatgattta 2233879  T
Q  201 attccattttt 211  Q
    |||| ||||||    
T  2233878 attctattttt 2233868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 32162764 - 32162870
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 202  Q
    |||||||||| ||| ||||||| |||||||| ||| || || || ||||||||||||||| |||||| |||| || |||| | | |||||||||||||||    
T  32162764 gttaagaaatcaaaaataaaaacattttgttcgaa-ttgtgtat-caatattttagaaatgtaaaatcttatattttcaaaataaaatttatgatttaat 32162861  T
Q  203 tccattttt 211  Q
    |||||||||    
T  32162862 tccattttt 32162870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 39907939 - 39908046
Alignment:
Q  104 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 203  Q
    |||| ||| |||||||| ||||||||| | | | ||||||||||  |||||||||||||||||||| ||||||| | || | | |||||||| |||||||    
T  39907939 ttaaaaaactaaagatataaatattttatagaatattatgcatttcatattttagaaatttaaaatgttatctttttaaaataaaatttatgttttaatt 39908038  T
Q  204 ccattttt 211  Q
     |||||||    
T  39908039 tcattttt 39908046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 17072689 - 17072750
Alignment:
Q  104 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaattta 165  Q
    ||||||||| |||||||||||||||||||||   ||| ||||||||||||| ||||||||||    
T  17072689 ttaagaaatcaaagataaaaatattttgttgtggattgtgcattcaatattctagaaattta 17072750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 17575582 - 17575521
Alignment:
Q  104 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaattta 165  Q
    ||||||||| |||||||||||||||||||||   ||| ||||||||||||| ||||||||||    
T  17575582 ttaagaaatcaaagataaaaatattttgttgtggattgtgcattcaatattctagaaattta 17575521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 41242316 - 41242179
Alignment:
Q  74 aaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttta 173  Q
    ||||| ||||||||| ||| || ||| | |||||||||  ||||||||||| ||||||||||||||| |||||| |||||||||||||||| |||| |||    
T  41242316 aaatgttaacttatgccctcaaggcacaagttaagaaaccaaagataaaaacattttgttggaaattgtgcatttaatattttagaaatttgaaatctta 41242217  T
Q  174 tcttatcaagacataatttatgatttaattccattttt 211  Q
    |||| ||| |||||||||||||||||||||| ||||||    
T  41242216 tcttttcaggacataatttatgatttaattctattttt 41242179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 16041133 - 16041230
Alignment:
Q  114 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 211  Q
    ||||||| ||| |||||| |||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  16041133 aaagatagaaacattttgatggaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttatgatttaattccattttt 16041230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 16053073 - 16053170
Alignment:
Q  114 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 211  Q
    ||||||| ||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  16053073 aaagatagaaacattttgttggaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttatgatttaattccaatttt 16053170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 11077076 - 11076939
Alignment:
Q  73 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 172  Q
    ||||||||||||| |||| | || ||| | |||||||||| ||||||| ||| |||| |||||||||| |||| ||||||||||||||||||||||| ||    
T  11077076 gaaatgctaacttgtgtcgttaaggcacaagttaagaaatcaaagatagaaacattt-gttggaaattgtgcaatcaatattttagaaatttaaaatctt 11076978  T
Q  173 atcttatcaagacataatttatgatttaattccattttt 211  Q
    || || |||||||| |||||||| |||||||||||||||    
T  11076977 atattttcaagacaaaatttatgttttaattccattttt 11076939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 16037577 - 16037674
Alignment:
Q  114 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 211  Q
    ||||||| ||| |||||| |||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  16037577 aaagatagaaacattttgatggaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttgtgatttaattccattttt 16037674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 17517988 - 17517888
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 202  Q
    |||||||||| ||||||| |||||||||||| |||||| ||||||||||||| || ||||||||| | ||||||| |||||| |||||||||||||||||    
T  17517988 gttaagaaatcaaagatagaaatattttgttagaaattgtgcattcaatattctaaaaatttaaattcttatcttttcaagatataatttatgatttaat 17517889  T
Q  203 t 203  Q
    |    
T  17517888 t 17517888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 37820924 - 37820798
Alignment:
Q  74 aaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttta 173  Q
    ||||| ||||||||| ||| ||| || | ||||| ||| |||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||    
T  37820924 aaatgttaacttatgcccttaaaacacaagttaataaactaaatataaaaatattttattggaaattatgcattccatgttttagaaatttaaaatctta 37820825  T
Q  174 tcttatcaagacataatttatgattta 200  Q
    |||| | ||||||  ||||||| ||||    
T  37820824 tctttttaagacaatatttatgtttta 37820798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 39933347 - 39933443
Alignment:
Q  114 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 211  Q
    |||||||||||  |||||||| ||||| ||||||||||||| || |||||| |||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  39933347 aaagataaaaaatttttgttgaaaattgtgcattcaatattctaaaaattt-aaattttatcttttcaaaacacaatttatgatttaattctattttt 39933443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 208
Target Start/End: Complemental strand, 9821102 - 9821003
Alignment:
Q  109 aaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccatt 208  Q
    |||||||||||| |||||||||||| |||||| ||||||||| ||| |  |||||| |||| ||||||| |||| ||||||||||| ||| |||||||||    
T  9821102 aaattaaagatagaaatattttgttagaaattgtgcattcaagattctgaaaattttaaatcttatcttttcaaaacataatttataattcaattccatt 9821003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 28389387 - 28389501
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttag------aaatttaaaattttatcttatcaagacataatttatga 196  Q
    |||||||||  ||||||||||||||||||||||||||| | |||| ||| || |||      ||||||||||| ||||||| |||||| |||||||||||    
T  28389387 gttaagaaaccaaagataaaaatattttgttggaaattgtacatttaatgttctagtcctataaatttaaaatattatcttttcaagatataatttatga 28389486  T
Q  197 tttaattccattttt 211  Q
    |||||||| ||||||    
T  28389487 tttaattctattttt 28389501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 31229861 - 31229723
Alignment:
Q  73 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 172  Q
    |||||| ||| || || ||| |||||| | ||||||| |||| | ||| ||| ||||| ||||||||| | ||||| || ||||||||||||||||| ||    
T  31229861 gaaatgttaatttgtgcccttaaagcataagttaagagattacatatagaaacattttattggaaattgtacattctatgttttagaaatttaaaatctt 31229762  T
Q  173 atcttatcaagacataatttatgatttaattccattttt 211  Q
    ||  | |||||| |||||||||| |||| ||| ||||||    
T  31229761 atgatttcaagatataatttatgttttacttctattttt 31229723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 5050697 - 5050593
Alignment:
Q  107 agaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattcca 206  Q
    |||| ||||| ||| ||||||||| ||  ||||| |||||||||||| ||| |||||||||||||| |||| |||| ||| || |||   ||||||||||    
T  5050697 agaagttaaacatagaaatattttcttaaaaattgtgcattcaatatattaaaaatttaaaattttgtcttttcaatacaaaagttacattttaattcca 5050598  T
Q  207 ttttt 211  Q
    |||||    
T  5050597 ttttt 5050593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 34730826 - 34730789
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaatt 140  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  34730826 gttaagaaactaaagataaaaatattttgttggaaatt 34730789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 50744820 - 50744732
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatt 191  Q
    ||||||||| |||||||| ||||||||| ||  ||||| ||||||  |||||||| ||||||||||| ||| ||| || ||||| ||||    
T  50744820 gttaagaaactaaagatataaatattttattaaaaattgtgcatttcatattttaaaaatttaaaatcttaacttctctagacaaaatt 50744732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 34870172 - 34870135
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaatt 140  Q
    |||||||||  |||||||||||||||||||||||||||    
T  34870172 gttaagaaaccaaagataaaaatattttgttggaaatt 34870135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 6276753 - 6276809
Alignment:
Q  156 tagaaatttaaaattttatcttatcaagacataatttatgatttaattccatttttc 212  Q
    ||||||||| |||| |||| || |||||||||||||||| ||||||||  |||||||    
T  6276753 tagaaattttaaatcttatattttcaagacataatttataatttaattatatttttc 6276809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 12185815 - 12185707
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 202  Q
    ||||||||| |||| ||| ||||||||||||| ||||| ||||||||||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  12185815 gttaagaaactaaaaatagaaatattttgttgaaaattgtgcattcaatattctagaaattcaaaatcttatcttttcaagacataatttatgatttaat 12185716  T
Q  203 tccattttt 211  Q
    |||||||||    
T  12185715 tccattttt 12185707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 9456316 - 9456209
Alignment:
Q  104 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 203  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||||| | |||||||||||||| |||| || |||||||||||||||| ||||||||    
T  9456316 ttaagaaatcaaagatagaaatattttgttggaaattgtgcattcaatagtctagaaatttaaaatcttatattttcaagacataatttataatttaatt 9456217  T
Q  204 ccattttt 211  Q
    ||||||||    
T  9456216 ccattttt 9456209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 3441326 - 3441218
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 202  Q
    ||||| |||||||||||| ||| ||||| | ||||||| ||||||  ||||||||||| |||||||| |||| || |||||| | |||||||| ||||||    
T  3441326 gttaaaaaattaaagatagaaacattttataggaaattgtgcatttcatattttagaactttaaaatcttatattttcaagataaaatttatgttttaat 3441227  T
Q  203 tccattttt 211  Q
    | |||||||    
T  3441226 ttcattttt 3441218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 10068183 - 10068289
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 202  Q
    ||||||||| |||| ||| ||||||||| |||||  || ||||||  || ||||||||||||||||||||||  | |||||||| |||||||| ||||||    
T  10068183 gttaagaaactaaatatagaaatattttattgga--ttgtgcatttcatgttttagaaatttaaaattttattctgtcaagacaaaatttatgttttaat 10068280  T
Q  203 tccattttt 211  Q
    | |||||||    
T  10068281 ttcattttt 10068289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 195
Target Start/End: Complemental strand, 25070494 - 25070402
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatg 195  Q
    ||||| ||| |||||||| ||| ||||| ||  ||||| || |||  |||||||||||||||||||| ||||||| | |||||| ||||||||    
T  25070494 gttaaaaaactaaagatataaacattttattaaaaattgtgtatttcatattttagaaatttaaaatcttatcttttgaagacaaaatttatg 25070402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 10483464 - 10483415
Alignment:
Q  163 ttaaaattttatcttatcaagacataatttatgatttaattccatttttc 212  Q
    ||||||| |||| || |||||||| |||||||| ||||||||||||||||    
T  10483464 ttaaaatcttatattttcaagacaaaatttatgttttaattccatttttc 10483415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 3067713 - 3067606
Alignment:
Q  104 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 203  Q
    ||||||||  ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  3067713 ttaagaaaccaaagatagaaacattttgttggaaattgtgcattcaatattttagaaatttaaaatcttatcttttcaagaaataatttatgatttaatt 3067614  T
Q  204 ccattttt 211  Q
     |||||||    
T  3067613 tcattttt 3067606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 5050426 - 5050533
Alignment:
Q  104 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 203  Q
    ||||||||  ||||||||||| ||||| ||| ||||| |||||| ||||||||||||||||||||| ||||||| |  || |||||||||||||||||||    
T  5050426 ttaagaaaccaaagataaaaacattttattgaaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgaggcataatttatgatttaatt 5050525  T
Q  204 ccattttt 211  Q
    | ||||||    
T  5050526 ctattttt 5050533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 4059206 - 4059118
Alignment:
Q  115 aagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 203  Q
    |||||||||| ||||| || |||||| || |||  |||||||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  4059206 aagataaaaacattttattagaaattgtgtattttatattttagaaatttaaaattttatcttttcaagacaaaatttatgttttaatt 4059118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 31040283 - 31040356
Alignment:
Q  105 taagaaattaaagataaaaatattttgttggaaattatgcat-tcaatattttagaaatttaaaattttatctt 177  Q
    |||||||||||| ||||||||||||| ||||||||||||||| | ||| ||||||||||||||||| |||||||    
T  31040283 taagaaattaaatataaaaatattttattggaaattatgcatattaatgttttagaaatttaaaatcttatctt 31040356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 43968077 - 43967986
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttat 194  Q
    |||||||||  ||||||| ||| ||||||||| ||||| |||||| |||||| || |||||| |||| ||||||| ||||||||||||||||    
T  43968077 gttaagaaaccaaagatagaaacattttgttgaaaattgtgcatttaatattctaaaaattttaaatcttatcttttcaagacataatttat 43967986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 18371146 - 18371248
Alignment:
Q  109 aaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccatt 208  Q
    |||||||||||| ||||||||| | ||||||| ||||||| ||||||||||| |||||||| |||| || | |||| | |||||||  ||||||||| ||    
T  18371146 aaattaaagatagaaatattttataggaaattgtgcattctatattttagaactttaaaatcttatatttttaagataaaatttatattttaattccttt 18371245  T
Q  209 ttt 211  Q
    |||    
T  18371246 ttt 18371248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 36622186 - 36622116
Alignment:
Q  107 agaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatctt 177  Q
    ||||| |||| ||| ||| ||||| ||||||||| |||||||||||| ||| |||||||||||||||||||    
T  36622186 agaaagtaaacatataaacatttttttggaaattgtgcattcaatatattaaaaatttaaaattttatctt 36622116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 45891795 - 45891904
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatc-aagacataatttatgatttaa 201  Q
    |||||||||  |||| || ||| ||||||||||| ||| |||||||||| |  || ||||||||||| |||| || || |||||| || |||||||||||    
T  45891795 gttaagaaaccaaagttagaaacattttgttggagattgtgcattcaatgtcctaaaaatttaaaatcttattttttcaaagacaaaaattatgatttaa 45891894  T
Q  202 ttccattttt 211  Q
    ||| ||||||    
T  45891895 ttctattttt 45891904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 25808592 - 25808484
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 202  Q
    |||||||||  |||||||||||||||||||| |||||| || ||||||||||||| ||||||||||||||||||| | ||||||  ||||||||||||||    
T  25808592 gttaagaaaccaaagataaaaatattttgttagaaattgtgtattcaatattttaaaaatttaaaattttatcttttgaagacaacatttatgatttaat 25808493  T
Q  203 tccattttt 211  Q
    |||||||||    
T  25808492 tccattttt 25808484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 46298512 - 46298648
Alignment:
Q  75 aatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttat 174  Q
    |||||||||||||||||| ||  || | |||||||||  ||||||||||| ||||||||||||||| |  |||||||||| |||||||||||||| ||||    
T  46298512 aatgctaacttatgtccttaagacacaagttaagaaaccaaagataaaaacattttgttggaaattgtatattcaatattatagaaatttaaaatcttat 46298611  T
Q  175 cttatcaagacataatttatgatttaattccattttt 211  Q
    ||| ||||||||  ||||||| |||||||| ||||||    
T  46298612 cttttcaagacaacatttatgttttaattctattttt 46298648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 31501162 - 31501054
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 202  Q
    ||||| |||| ||||||| ||| || |||||||||||| |||||| ||| || |||||||||||||| ||||||| |||| ||| || ||||||||||||    
T  31501162 gttaaaaaatcaaagatagaaacatattgttggaaattgtgcatttaatgttctagaaatttaaaatcttatcttttcaaaacaaaaattatgatttaat 31501063  T
Q  203 tccattttt 211  Q
    | |||||||    
T  31501062 ttcattttt 31501054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 19339915 - 19339997
Alignment:
Q  104 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagaca 186  Q
    ||||||||  ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||| | ||||||| ||||||||    
T  19339915 ttaagaaaccaaagatataaacattttgttggaaattgtgcattcaatattttagaactttaaagtcttatcttttcaagaca 19339997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 210
Target Start/End: Original strand, 49423341 - 49423448
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 202  Q
    ||||| |||||||| ||||||||||||| ||| ||||| ||||||  || ||||| ||||||||||| ||||||| | |||| |  ||||||| ||||||    
T  49423341 gttaataaattaaacataaaaatattttattgaaaattgtgcatttcatgttttaaaaatttaaaatcttatctttttaagataatatttatgttttaat 49423440  T
Q  203 tccatttt 210  Q
    || |||||    
T  49423441 tctatttt 49423448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 23392823 - 23392714
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaattt-aaaattttatcttatcaagacataatttatgatttaa 201  Q
    |||||||||||||| ||  ||||||||| ||  ||||| |||||| ||||||||| || ||| ||||| |||| || | |||| | |||||||  |||||    
T  23392823 gttaagaaattaaaaattgaaatattttatttaaaattgtgcatttaatattttaaaattttaaaaatcttatatttttaagataaaatttattttttaa 23392724  T
Q  202 ttccattttt 211  Q
    ||||||||||    
T  23392723 ttccattttt 23392714  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 51540737 - 51540817
Alignment:
Q  132 ttggaaattatgcattcaatattttagaaa-tttaaaattttatcttatcaagacataatttatgatttaattccattttt 211  Q
    ||||||||| || ||||| ||||||| ||| ||||||||||||| || | ||| || || ||||| |||||||||||||||    
T  51540737 ttggaaattgtgtattcattattttaaaaagtttaaaattttattttgttaagtcaaaacttatgttttaattccattttt 51540817  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 2126287 - 2126184
Alignment:
Q  108 gaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccat 207  Q
    |||| |||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||  |||| || ||||||||| |||||||||||||||||||    
T  2126287 gaaactaaagatagaaatattttgttggaaattgtgcattcaatattttaaaaatttaaaaacttatattttcaagacatgatttatgatttaattccat 2126188  T
Q  208 tttt 211  Q
    ||||    
T  2126187 tttt 2126184  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 11152190 - 11152279
Alignment:
Q  104 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataattta 193  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||    
T  11152190 ttaagaaatcaaagatgaaaatattttgttggaaattgtgcattcaatattctagaaatttaaaatcttatcttctcaagacataattta 11152279  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 22348792 - 22348730
Alignment:
Q  106 aagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaa 168  Q
    |||||| |||| ||||||||||||| ||| ||||| |||||||||||||||| || |||||||    
T  22348792 aagaaactaaatataaaaatattttcttgaaaattgtgcattcaatattttaaaagtttaaaa 22348730  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 22345757 - 22345686
Alignment:
Q  106 aagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatctt 177  Q
    ||||||||||| ||  || |||||| || |||||| |||||||||||||||| | |||||||| ||||||||    
T  22345757 aagaaattaaatatttaagtattttctttgaaattgtgcattcaatattttaaacatttaaaaatttatctt 22345686  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 35075847 - 35075954
Alignment:
Q  105 taagaaattaaagataaaaatatttt-gttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 203  Q
    ||||||| |||||||| ||| ||||| |||| ||||| ||||||||||||| |||||||||||||| ||||||| |||||||| || |||||||||||||    
T  35075847 taagaaactaaagatataaacatttttgttgaaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacaaaaattatgatttaatt 35075946  T
Q  204 ccattttt 211  Q
    | ||||||    
T  35075947 ctattttt 35075954  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 31559181 - 31559096
Alignment:
Q  114 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgattt 199  Q
    ||||||| ||| ||||||||||| ||| |||||| | |||||||| ||||||||||||||| || |||||||||||||||| ||||    
T  31559181 aaagatagaaacattttgttggacattgtgcatttagtattttagcaatttaaaattttatgttttcaagacataatttattattt 31559096  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 5150835 - 5150888
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatatttt 156  Q
    ||||||||  ||||||| |||||||||| ||| |||||||||||||||||||||    
T  5150835 gttaagaagctaaagattaaaatattttcttgaaaattatgcattcaatatttt 5150888  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 210
Target Start/End: Original strand, 10020725 - 10020829
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 202  Q
    ||||| |||||||| ||| ||||||||||   |||||  | ||||| || |||||||||||||||| ||||| || ||||||||  |||| || ||||||    
T  10020725 gttaataaattaaatatagaaatattttg---gaaatcgttcattctatgttttagaaatttaaaaatttatattttcaagacaatatttttgttttaat 10020821  T
Q  203 tccatttt 210  Q
    ||||||||    
T  10020822 tccatttt 10020829  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 7802030 - 7802090
Alignment:
Q  150 atattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 211  Q
    |||||||||||||||||||||||||||| | |||||| |||||    |||||||||||||||    
T  7802030 atattttagaaatttaaaattttatctt-ttaagacaaaatttgcattttaattccattttt 7802090  T

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Target: scaffold0402 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 2978 - 3060
Alignment:
Q  104 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagaca 186  Q
    ||||||||  ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||| | ||||||| ||||||||    
T  2978 ttaagaaaccaaagatataaacattttgttggaaattgtgcattcaatattttagaactttaaagtcttatcttttcaagaca 3060  T

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Target: scaffold1786 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 365 - 473
Alignment:
Q  103 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 202  Q
    ||||||| |||||| ||  ||||||||||||  ||||| |||||| ||||||||| || |||||||| |||| || | |||| | |||||||  ||||||    
T  365 gttaagatattaaaaattgaaatattttgttcaaaattgtgcatttaatattttaaaattttaaaatcttatatttttaagataaaatttattttttaat 464  T
Q  203 tccattttt 211  Q
    | |||||||    
T  465 ttcattttt 473  T

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