View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_481 (Length: 244)
Name: NF10145A_low_481
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_481 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 35449814 - 35450052
Alignment:
| Q |
1 |
atcattagagaaagagatgaagcacaagaaaaatgtgaaaggcttctcttggaaaagctagttttccatcaacaacaaaatgctccactttccggagttt |
100 |
Q |
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| T |
35449814 |
atcattagagaaagagatgaagcacaagaaaaatgtcaaagacttctcttggaaaagctagttttccatcaacaacaaaatgatccactttccggagttt |
35449913 |
T |
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| Q |
101 |
caagcattgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcatcagattgtgaagaaagcattgtttcttcacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35449914 |
caagcattgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcttcagattgtgaagaaagcattgtttcttcacc |
35450013 |
T |
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| Q |
201 |
aattattgatcaatcaatgattgaagtactaacaccaaa |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
35450014 |
aattattgatcaatcaatgattgaagtactaacaccaaa |
35450052 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 21010701 - 21010633
Alignment:
| Q |
7 |
agagaaagagatgaagcacaagaaaaatgtgaaaggcttctcttggaaaagctagttttccatcaacaa |
75 |
Q |
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||||||||||||||||||||||||||||| |||| ||| |||| |||||| || ||||||| |||||| |
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| T |
21010701 |
agagaaagagatgaagcacaagaaaaatgccaaagacttttcttagaaaagttacttttccaacaacaa |
21010633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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