View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_485 (Length: 244)
Name: NF10145A_low_485
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_485 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 4082875 - 4083112
Alignment:
| Q |
1 |
agaacatataactaattgtcagcaatagaagtcacttacatagataatatcttttgtcatgggaagaagatcgccctatgacaatgccaataattcattg |
100 |
Q |
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| T |
4082875 |
agaacatagaacaaattgtcagcaatagaaatcacttacatcgataatatcttttgtcatgggaagaagattgccctatgacaatgccaacaatttatta |
4082974 |
T |
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| Q |
101 |
ataggtccatttctatatttttcattctccctaataggattagcaacaagcattgccataatcacaactctatgtagtgttcgatttcgaagaagaaaat |
200 |
Q |
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| T |
4082975 |
ataggtccatttctaaatttttcattctccctaataggattagcaacaagcattgccataatcacaactctatgtagtgttcgatttcgaagaagaaaat |
4083074 |
T |
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| Q |
201 |
tgacgccgccccctacaacaccgatatcaaacaccaaa |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
4083075 |
tgacgccgccccctacaacaccgatatcaaacaccaaa |
4083112 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 48203072 - 48203029
Alignment:
| Q |
151 |
cattgccataatcacaactctatgtagtgttcgatttcgaagaa |
194 |
Q |
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| T |
48203072 |
cattgccataatcacaactatatgtagttttcgattccgaagaa |
48203029 |
T |
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