View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_487 (Length: 244)
Name: NF10145A_low_487
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_487 |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 14016780 - 14016978
Alignment:
| Q |
6 |
gagaagtgaaaaagttgaacttggattgactcaatgaaaggataaaatgatcagaaaggccacatcttcttagacttagttctctaagttttggtagctt |
105 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| ||| |
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| T |
14016780 |
gagaagtggaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaaggccacaatctcttaaacttagttctctcagttttggtaactt |
14016879 |
T |
|
| Q |
106 |
agcaaccatttgcaaccaactattaaatttatcaagattatatatcgacaacatttcaagatgggttaaagaagtaagattagacaaccactgacctcc |
204 |
Q |
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| ||||||||||||||||||||||| |||||| ||||||| |||||||| |||| | |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14016880 |
accaaccatttgcaaccaactattagatttattaagattagatatcgacgacatgtgaagatgggttaaagaattaagattagacaaccactgacctcc |
14016978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 6 - 204
Target Start/End: Complemental strand, 13861345 - 13861147
Alignment:
| Q |
6 |
gagaagtgaaaaagttgaacttggattgactcaatgaaaggataaaatgatcagaaaggccacatcttcttagacttagttctctaagttttggtagctt |
105 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||| |||||||||| ||| |
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| T |
13861345 |
gagaattggaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaaggtcacaatttcttaaacttagttctcttagttttggtaactt |
13861246 |
T |
|
| Q |
106 |
agcaaccatttgcaaccaactattaaatttatcaagattatatatcgacaacatttcaagatgggttaaagaagtaagattagacaaccactgacctcc |
204 |
Q |
| |
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| ||||||||| ||||||||||||||||||||||||||| |||| |||| || | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13861245 |
accaaccatttttaaccaactattaaatttatcaagattagatattgacatcagatgaagatgggttaaagaagtaagattagacaaccactgacctcc |
13861147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 13942764 - 13942967
Alignment:
| Q |
6 |
gagaagtgaaaaagttgaacttggattgactcaatgaaaggataaaatgatcagaaaggccacatcttcttagacttagttctctaagttttggtagctt |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |||||||||||| || ||||||| ||| |
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| T |
13942764 |
gagaagttgaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaaggtcacaatatcttaaacttagttctcttagatttggtaactt |
13942863 |
T |
|
| Q |
106 |
agcaaccatttgcaaccaactattaaatttatcaagattatatatcgacaacatttcaagatgggttaaagaagtaagattagacaaccactgacctccg |
205 |
Q |
| |
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| ||||||||| ||||||||||||| |||||| ||||||| |||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13942864 |
accaaccattttcaaccaactattagatttattaagattagatatcgaccacatgtgaagatgggttaaagaagtaagattagacaaccactgacctcca |
13942963 |
T |
|
| Q |
206 |
ttgt |
209 |
Q |
| |
|
|||| |
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|
| T |
13942964 |
ttgt |
13942967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 14112176 - 14112374
Alignment:
| Q |
6 |
gagaagtgaaaaagttgaacttggattgactcaatgaaaggataaaatgatcagaaaggccacatcttcttagacttagttctctaagttttggtagctt |
105 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||| |||||||||| ||| |
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| T |
14112176 |
gagaattggaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaaggtcacaatttcttaaacttagttctcttagttttggtaactt |
14112275 |
T |
|
| Q |
106 |
agcaaccatttgcaaccaactattaaatttatcaagattatatatcgacaacatttcaagatgggttaaagaagtaagattagacaaccactgacctcc |
204 |
Q |
| |
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| |||||||||| ||||||||||||||||||||||||||| |||| |||| || | ||||||||||||||| || ||||||||||||||||||||||| |
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| T |
14112276 |
accaaccatttgaaaccaactattaaatttatcaagattagatattgacatcagatgaagatgggttaaagaggttagattagacaaccactgacctcc |
14112374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 14086367 - 14086565
Alignment:
| Q |
6 |
gagaagtgaaaaagttgaacttggattgactcaatgaaaggataaaatgatcagaaaggccacatcttcttagacttagttctctaagttttggtagctt |
105 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| |||| ||||||| ||||||| |||| |||||| |||||||||||| ||||||| || ||| |
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| T |
14086367 |
gagaagtggaaaagttgaacttggattgactcagggaatggatgaaatgataagaaaggtcacaatttcttaaacttagttctcttagttttgttaactt |
14086466 |
T |
|
| Q |
106 |
agcaaccatttgcaaccaactattaaatttatcaagattatatatcgacaacatttcaagatgggttaaagaagtaagattagacaaccactgacctcc |
204 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14086467 |
accaaccatttgaaaccaactattaaatttatcaagattagatattcacatcaggcgaagatgggttaaagaagttagattagacaaccactgacctcc |
14086565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 13471362 - 13471165
Alignment:
| Q |
6 |
gagaagtgaaaaagttgaacttggattgactcaatgaaaggataaaatgatcagaaaggccacatcttcttagacttagttctctaagttttggtagctt |
105 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||||| |||||||||| | |||||||||||||| |
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| T |
13471362 |
gagaagtggaaaatttgaacttggattgactcaaggaatggacaaaatgatcagaaaggccacaatttcttaaacttagttctatcagttttggtagctt |
13471263 |
T |
|
| Q |
106 |
agcaaccatttgcaaccaactattaaatttatcaagattatatatcgacaacatttcaagatgggttaaagaagtaagattagacaaccactgacctc |
203 |
Q |
| |
|
| |||| ||| |||||||||||||||| ||| |||||| |||||||| |||| | ||||||||||||||| |||| |||||||| ||||||||||| |
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| T |
13471262 |
accaactgtttccaaccaactattaaatctataaagatttgatatcgacgacatgtgaagatgggttaaagaggtaaaattagacagccactgacctc |
13471165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 13891369 - 13891168
Alignment:
| Q |
6 |
gagaagtgaaaaagttgaacttggattgactcaatgaaaggataaaatgatcagaaaggccacatcttcttagact-tagttctctaagttttggtagct |
104 |
Q |
| |
|
|||| ||| |||| |||||||| |||| |||||| ||| ||||||||||||||||||||||||| ||| ||| ||| ||||||||| |||||| |||||| |
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|
| T |
13891369 |
gagatgtggaaaaattgaacttcgatttactcaaagaatggataaaatgatcagaaaggccacaacttatta-actctagttctctcagttttagtagct |
13891271 |
T |
|
| Q |
105 |
tagcaaccatttgcaaccaactattaaatttatcaagattatatatcgacaacatttcaagatgggttaaagaagtaagattagacaaccactgacctcc |
204 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||| || |||| |||||||| | ||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
13891270 |
taccaaccatttgcaaccaactattggatttatcaagactagatattgacaacatgtgaagatgggttaaagaagtaagattagataacca--gacctcc |
13891173 |
T |
|
| Q |
205 |
gttgt |
209 |
Q |
| |
|
||||| |
|
|
| T |
13891172 |
gttgt |
13891168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 33 - 204
Target Start/End: Complemental strand, 13873626 - 13873455
Alignment:
| Q |
33 |
gactcaatgaaaggataaaatgatcagaaaggccacatcttcttagacttagttctctaagttttggtagcttagcaaccatttgcaaccaactattaaa |
132 |
Q |
| |
|
||||| ||||||| ||| |||||||||||| ||||| ||| || |||||||||| | ||||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
13873626 |
gactcgatgaaagagtaatatgatcagaaagaccacaactttctaaacttagttctttcagttttggtagcttaccaaccaattgcaaccaactattaaa |
13873527 |
T |
|
| Q |
133 |
tttatcaagattatatatcgacaacatttcaagatgggttaaagaagtaagattagacaaccactgacctcc |
204 |
Q |
| |
|
| ||||||||||| |||| |||||||| | |||||||||||||||||| ||||| ||||||||| |||||| |
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|
| T |
13873526 |
tctatcaagattagatattgacaacatctgaagatgggttaaagaagttagattcaacaaccacttacctcc |
13873455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 14048917 - 14049076
Alignment:
| Q |
50 |
aaatgatcagaaaggccacatcttcttagacttagttctctaagttttggtagcttagcaaccatttgcaaccaactattaaatttatcaagattatata |
149 |
Q |
| |
|
||||||||||||||| |||| | ||| | ||||||||| | ||||||||||||| ||||||||| |||| ||||||||||| |||||||||| ||| |
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|
| T |
14048917 |
aaatgatcagaaaggtcacaatctgttaaatttagttctcccaattttggtagcttaccaaccatttccaacaaactattaaatctatcaagattcaata |
14049016 |
T |
|
| Q |
150 |
tcgacaacatttcaagatgggttaaagaagtaagattagacaaccactgacctccgttgt |
209 |
Q |
| |
|
| ||| |||| | |||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
14049017 |
ttgacgacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccattgt |
14049076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 14026743 - 14026851
Alignment:
| Q |
8 |
gaagtgaaaaagttgaacttggattgactcaatgaaaggataaaatgatcagaaaggccacatcttcttagacttagttctctaagttttggtagcttag |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || || |||||||||||| |||||||||| |||| |
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|
| T |
14026743 |
gaagtggaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaaggccacaattttgtaaacttagttctctcagttttggtaacttac |
14026842 |
T |
|
| Q |
108 |
caaccattt |
116 |
Q |
| |
|
||||||||| |
|
|
| T |
14026843 |
caaccattt |
14026851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 14026857 - 14026902
Alignment:
| Q |
164 |
agatgggttaaagaagtaagattagacaaccactgacctccgttgt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14026857 |
agatgggttaaagaagtaagattagacaaccactgacctccgttgt |
14026902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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