View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_492 (Length: 244)
Name: NF10145A_low_492
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_492 |
 | |
|
| [»] scaffold0232 (2 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 14962961 - 14963197
Alignment:
| Q |
1 |
aagaggtcataacattgaaagtttatgttttatctaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttatttacttgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14962961 |
aagaggtcataacattgaaagtttatgttttatttaatttatgaaatatttgacattatcactgtcaaaatttgttgatggtctgttttatttacttgtt |
14963060 |
T |
|
| Q |
101 |
tcatgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14963061 |
tcatgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgct |
14963160 |
T |
|
| Q |
201 |
ggatatgtccgttctatggggcttgggataacaccat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14963161 |
ggatatgtccgttctatggggcttgggataacaccat |
14963197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 17006621 - 17006720
Alignment:
| Q |
56 |
ttatcactgtcaaagtttgttgatggtctgttttatttacttgtttcatgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaa |
155 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
17006621 |
ttatcactgtcaaagtttgttgatgttctgttttatttagttgtttcatgaactgttgtatatgcatgaattattgcaagttgaaatgcaaaacactcaa |
17006720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 18802347 - 18802568
Alignment:
| Q |
16 |
tgaaagtttatgttttatctaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttatttacttgtttcatgaactgttgta |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18802347 |
tgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgatgttctgttttatttacttgtttcatgaactgttgta |
18802446 |
T |
|
| Q |
116 |
tatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtccgttct |
215 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18802447 |
tatgcgggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtccgttct |
18802546 |
T |
|
| Q |
216 |
atggggcttgggataacaccat |
237 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
18802547 |
atggggcttgggataacaccat |
18802568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 15333393 - 15333636
Alignment:
| Q |
1 |
aagaggtcataacattgaaagtttatgttttatctaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttatttacttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |
|
|
| T |
15333393 |
aagaggtcataacattgaaagtttatattttatttaatttatgaaatgtttgacattatcactgtcaaaatttgttgatgttctgttttatttaattgtt |
15333492 |
T |
|
| Q |
101 |
tcatgaactgtt-------gtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaagga |
193 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15333493 |
tcatgaactgttgtatgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaagga |
15333592 |
T |
|
| Q |
194 |
acatgctggatatgtccgttctatggggcttgggataacaccat |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15333593 |
acatgctggatatgtccgttctatggggcttgggataacaccat |
15333636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 15513762 - 15514005
Alignment:
| Q |
1 |
aagaggtcataacattgaaagtttatgttttatctaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttatttacttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |
|
|
| T |
15513762 |
aagaggtcataacattgaaagtttatattttatttaatttatgaaatgtttgacattatcactgtcaaaatttgttgatgttctgttttatttaattgtt |
15513861 |
T |
|
| Q |
101 |
tcatgaactgtt-------gtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaagga |
193 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15513862 |
tcatgaactgttgtatgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaagga |
15513961 |
T |
|
| Q |
194 |
acatgctggatatgtccgttctatggggcttgggataacaccat |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15513962 |
acatgctggatatgtccgttctatggggcttgggataacaccat |
15514005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 15422489 - 15422732
Alignment:
| Q |
1 |
aagaggtcataacattgaaagtttatgttttatctaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttatttacttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||| ||||| |
|
|
| T |
15422489 |
aagaggtcataacattgaaagtttatattttatttaatttatgaaatgtttgacattatcactgtcaaaatttgttgatgttatgttttatttaattgtt |
15422588 |
T |
|
| Q |
101 |
tcatgaactgtt-------gtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaagga |
193 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15422589 |
tcatgaactgttgtatgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaagga |
15422688 |
T |
|
| Q |
194 |
acatgctggatatgtccgttctatggggcttgggataacaccat |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15422689 |
acatgctggatatgtccgttctatggggcttgggataacaccat |
15422732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 14980534 - 14980298
Alignment:
| Q |
1 |
aagaggtcataacattgaaagtttatgttttatctaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttatttacttgtt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| | |||||||||||||| || |||||||||||||||||||||||||||| |||||||||| || ||||| |
|
|
| T |
14980534 |
aagaggtcataacattgaaagcttatgtttcgtttaatttatgaaatgcttcacattatcactgtcaaagtttgttgatgttctgttttatatagttgtt |
14980435 |
T |
|
| Q |
101 |
tcatgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgct |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14980434 |
tcatgaactgttgtatatgcaagaactattgcatgttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgat |
14980335 |
T |
|
| Q |
201 |
ggatatgtccgttctatggggcttgggataacaccat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14980334 |
ggatatgtccgttctatggggcttgggataacaccat |
14980298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 20464003 - 20463907
Alignment:
| Q |
114 |
tatatgcaggaactattgcaagttgaaatgcaaaaca-ctcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtc |
209 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| || |||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||||| |
|
|
| T |
20464003 |
tatatgcaggaacaattgcaagctgaaatgcaaaccaactcaatttgagaatgaagcatttgtcaaagggtttggaaagggacatgctggatatgtc |
20463907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 48630667 - 48630901
Alignment:
| Q |
1 |
aagaggtcataacattgaaagtttatgttttatctaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttatttacttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||| ||| ||| ||||||||| ||||| |
|
|
| T |
48630667 |
aagaggtcataacattgaaagttt--gttttgtttaatttatgaaatgcttgacattatcactgtcaaagtttgtttatgttctattttatttagttgtt |
48630764 |
T |
|
| Q |
101 |
tcatgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48630765 |
tcatgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacacttaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgct |
48630864 |
T |
|
| Q |
201 |
ggatatgtccgttctatggggcttgggataacaccat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48630865 |
ggatatgtccgttctatggggcttgggataacaccat |
48630901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 21301747 - 21301515
Alignment:
| Q |
5 |
ggtcataacattgaaagtttatgttttatctaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttatttacttgtttcat |
104 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| ||| ||||||||| |
|
|
| T |
21301747 |
ggtcataacgttgaaagtttatgttttgtttaatttatgaaatgcttgacattatcactatcaaagtttgttgatgttctgttttagttagttgtttcat |
21301648 |
T |
|
| Q |
105 |
gaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21301647 |
gaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttgaaaaggaacatgctggat |
21301548 |
T |
|
| Q |
205 |
atgtccgttctatggggcttgggataacaccat |
237 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
21301547 |
atgtccgttctatggggcttgggataactccat |
21301515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 5404737 - 5404808
Alignment:
| Q |
19 |
aagtttatgttttatctaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgtttta |
90 |
Q |
| |
|
||||||||||||| | |||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
5404737 |
aagtttatgttttgtttaatttatgaaatgcctgacattatcactgttaaagtttgttgatgttctatttta |
5404808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 4103645 - 4103875
Alignment:
| Q |
6 |
gtcataacattgaaagtttatgttttatctaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttatttacttgtttcatg |
105 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||| || | |||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
4103645 |
gtcataacattgaaagtttatgttttgtttaatttatgaaatgcttcatattatcactgtcaaagtttgttgatgttctgttttatttagttgtttcatg |
4103744 |
T |
|
| Q |
106 |
aactgttgtatatgcaggaact-attgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggat |
204 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
4103745 |
aactgttgtatatgcatgaactaattgcaagttgaaatgcaaaacactc--tgtgagaatgaagcatttttcaaagtgtttggaaaggagcatgttggat |
4103842 |
T |
|
| Q |
205 |
atgtccgttctatggggcttgggataacaccat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4103843 |
atgtccgttctatggggcttgggataacaccat |
4103875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 35184500 - 35184666
Alignment:
| Q |
1 |
aagaggtcataacattgaaagtttatgttttatctaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttatttacttgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| ||||||||||||||||| |||||| |||||| ||||| |
|
|
| T |
35184500 |
aagaggtcataacattgaaagtttatgttttgtttaatttatgaaatgcttgacattatcacggtcaaagtttgttgatgttctgttctatttagttgtt |
35184599 |
T |
|
| Q |
101 |
tcatgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaa |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
35184600 |
tcatgaactgttgtatatgcaggaactattgcaagctgaaattcaaaacactcaatgtgagaatgaa |
35184666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 47914706 - 47914825
Alignment:
| Q |
115 |
atatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtccgttc |
214 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
47914706 |
atatgcaggaacaattgcaaattgaaatgcaaaacactcc---tgagaatgaagcatttgtcaaagtgtttggaaaagaacatcctggatatgtgcgttc |
47914802 |
T |
|
| Q |
215 |
tatggggcttgggataacaccat |
237 |
Q |
| |
|
|||||| ||||||||| |||||| |
|
|
| T |
47914803 |
tatgggacttgggataccaccat |
47914825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 3498855 - 3498724
Alignment:
| Q |
103 |
atgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctgg |
202 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| ||||||| ||| |||||||| |||||||| | ||||| |||||||||| ||| | ||||| ||| |
|
|
| T |
3498855 |
atgaattgttgtatatgcaggaacaattgcaagctgaaatggaaaccactcaatttgagaatggatcatttgtcaaagtgttcgga---ggacatgttgg |
3498759 |
T |
|
| Q |
203 |
atatgtccgttctatggggcttgggataacaccat |
237 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| |
|
|
| T |
3498758 |
atatgtccgttccatgggacttgggataacaccat |
3498724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 35184664 - 35184709
Alignment:
| Q |
192 |
gaacatgctggatatgtccgttctatggggcttgggataacaccat |
237 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35184664 |
gaacatgttggatatgtccgttctatggggcttgggataacaccat |
35184709 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 2468924 - 2468968
Alignment:
| Q |
19 |
aagtttatgttttatctaatttatgaaatgtttgacattatcact |
63 |
Q |
| |
|
||||||||||||| | |||||||||||||| |||||||||||||| |
|
|
| T |
2468924 |
aagtttatgttttgtttaatttatgaaatgcttgacattatcact |
2468968 |
T |
|
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Target: scaffold0232 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0232
Description:
Target: scaffold0232; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 21063 - 21182
Alignment:
| Q |
115 |
atatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtccgttc |
214 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
21063 |
atatgcaggaacaattgcaaattgaaatgcaaaacactcc---tgagaatgaagcatttgtcaaagtgtttggaaaagaacatcctggatatgtgcgttc |
21159 |
T |
|
| Q |
215 |
tatggggcttgggataacaccat |
237 |
Q |
| |
|
|||||| ||||||||| |||||| |
|
|
| T |
21160 |
tatgggacttgggataccaccat |
21182 |
T |
|
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Target: scaffold0232; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 26146 - 26265
Alignment:
| Q |
115 |
atatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtccgttc |
214 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
26146 |
atatgcaggaacaattgcaaattgaaatgcaaaacactcc---tgagaatgaagcatttgtcaaagtgtttggaaaagaacatcctggatatgtgcgttc |
26242 |
T |
|
| Q |
215 |
tatggggcttgggataacaccat |
237 |
Q |
| |
|
|||||| ||||||||| |||||| |
|
|
| T |
26243 |
tatgggacttgggataccaccat |
26265 |
T |
|
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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 7190494 - 7190613
Alignment:
| Q |
115 |
atatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtccgttc |
214 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
7190494 |
atatgcaggaacaattgcaaattgaaatgcaaaacactcc---tgagaatgaagcatttgtcaaagtgtttggaaaagaacatcctggatatgtgcgttc |
7190590 |
T |
|
| Q |
215 |
tatggggcttgggataacaccat |
237 |
Q |
| |
|
|||||| ||||||||| |||||| |
|
|
| T |
7190591 |
tatgggacttgggataccaccat |
7190613 |
T |
|
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Target: scaffold0019 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 112175 - 112079
Alignment:
| Q |
114 |
tatatgcaggaactattgcaagttgaaatgcaaaaca-ctcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtc |
209 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| || |||||| |||||||||||||||| |||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
112175 |
tatatgcaggaacaattgcaagctgaaatgcaaaccaactcaatttgagaatgaagcatttgtcaaagggtttggaaagggacatgttggatatgtc |
112079 |
T |
|
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Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 114 - 209
Target Start/End: Original strand, 9326359 - 9326455
Alignment:
| Q |
114 |
tatatgcaggaactattgcaagttgaaatgcaaa-acactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtc |
209 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| | ||||||| |||||||||||||||| |||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
9326359 |
tatatgcaggaacaattgcaagctgaaatgcaaacaaactcaatttgagaatgaagcatttgtcaaagggtttggaaagggacatgttggatatgtc |
9326455 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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