View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_496 (Length: 243)

Name: NF10145A_low_496
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_496
NF10145A_low_496
[»] chr4 (3 HSPs)
chr4 (21-224)||(54396536-54396739)
chr4 (21-200)||(23587609-23587788)
chr4 (21-200)||(23596461-23596640)
[»] chr7 (3 HSPs)
chr7 (21-104)||(8017385-8017468)
chr7 (21-224)||(8102780-8102983)
chr7 (136-188)||(39985874-39985926)
[»] chr2 (2 HSPs)
chr2 (73-206)||(5445621-5445754)
chr2 (148-223)||(17716546-17716621)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 54396536 - 54396739
Alignment:
Q  21 atcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396536 atcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgt 54396635  T
Q  121 tcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccag 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396636 tcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccag 54396735  T
Q  221 catc 224  Q
    ||||    
T  54396736 catc 54396739  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 23587788 - 23587609
Alignment:
Q  21 atcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgt 120  Q
    ||||||||| |||||||| || || ||||| ||||| ||||||||||| || |||||||| ||||||||||| || |  || |||||||| |||||||      
T  23587788 atcaccagctgtagctttgacctcaaagataccttcctcaatagtaagtagggaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttc 23587689  T
Q  121 tcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacatt 200  Q
    || ||  | || | |||||||||||| | |||||||||||| |||||||| ||||| ||||||||||| |||||||||||    
T  23587688 tcacccgtgcttgtagctttcttatcaagaccataagcaatagcagcagcggtaggttcattaataattctcaacacatt 23587609  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 23596640 - 23596461
Alignment:
Q  21 atcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgt 120  Q
    ||||||||| ||||||||||| || ||||| ||||| |||||||||||||| |||||||| ||||||||||| || |  || |||||||| |||||||      
T  23596640 atcaccagctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttc 23596541  T
Q  121 tcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacatt 200  Q
    || ||  | || | |||||||||||| | |||||||||||| || |||||||| ||||| |||||||| |||| ||||||    
T  23596540 tcaccagtacttgtagctttcttatcaagaccataagcaatagcggcagcagtgggctcgttaataattctcatcacatt 23596461  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 8017468 - 8017385
Alignment:
Q  21 atcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaa 104  Q
    ||||||||||||||| || ||||| || || || |||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  8017468 atcaccagcagtagccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtaccacctcccaagtcaaa 8017385  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 8102780 - 8102983
Alignment:
Q  21 atcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgt 120  Q
    |||||| |||||||| || ||||| || || || ||||||||||||||||| || ||||| ||||| ||||| ||||| ||||| || | ||||||||      
T  8102780 atcacctgcagtagccttaacttcaaatataccctcttcaatagtaagaagtgacacatcaaaagtaccaccacccaaatcaaagatcaacacgttcttc 8102879  T
Q  121 tcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccag 220  Q
    || ||    || |  || || || || | ||| || ||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |  ||| ||||||    
T  8102880 tcaccaacacttgtcgcctttttgtcaagaccgtaggcaatagcagcagcagttggctcattaataattctcaaaacatttaaaccagcgataacaccag 8102979  T
Q  221 catc 224  Q
    ||||    
T  8102980 catc 8102983  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 39985874 - 39985926
Alignment:
Q  136 gctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataat 188  Q
    |||||||| || | |||||||||||| ||||||||||| |||||||| |||||    
T  39985874 gctttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataat 39985926  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 5445754 - 5445621
Alignment:
Q  73 gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag 172  Q
    ||||||||||| |||||||| || |  ||||| | |||||| ||||  || |||| |||| |   |||||| ||||||||||||||||| ||||| ||||    
T  5445754 gaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcag 5445655  T
Q  173 taggctcattaataatcctcaacacattcaaacc 206  Q
    ||||||| || || ||||||| |||||| |||||    
T  5445654 taggctcgttgatgatcctcatcacattaaaacc 5445621  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 17716621 - 17716546
Alignment:
Q  148 aaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcat 223  Q
    |||||||||||||| || |||||||| |||||||||||||| ||||  | ||| | ||| | ||||||||||||||    
T  17716621 aaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcat 17716546  T

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