View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_497 (Length: 243)
Name: NF10145A_low_497
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_497 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 31328520 - 31328294
Alignment:
| Q |
17 |
acatcattccaagtctttttggggatttagtagaagcaaaagtctcaattgtgatacaaagaagaatttgagtttttctttacctcctttgtatagaagt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31328520 |
acatcattccaagtctttttggggatttagtagaagcaaaagtctcaattgtgatacaaagaagaatttgagtttttctttacctcctttgtatagaagt |
31328421 |
T |
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| Q |
117 |
aactcaactggttcggcgnnnnnnntgagttcaaacaagcaaacatcatcagcaacaacaaaatcatcatcatggtctaacataaatttgtatcctatgc |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31328420 |
aactcaactggttcggcgaaaaaaatgagttcaaacaagcaaacatcatcagcaacaacaaaatcatcatcatggtctaacataaatttgtatcctatgc |
31328321 |
T |
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| Q |
217 |
aaaaatataattaaggaaagagttatg |
243 |
Q |
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|||||| ||||| ||| |||||||||| |
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| T |
31328320 |
aaaaatctaattcaggtaagagttatg |
31328294 |
T |
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