View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_499 (Length: 243)
Name: NF10145A_low_499
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_499 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 52514902 - 52514672
Alignment:
| Q |
13 |
acatcacagaaatggagtattaccgtgagaagctgaagaatgatgaagtcatcagtgatgctgtgccacttcgacagcgacttcctgaaccagatactga |
112 |
Q |
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| T |
52514902 |
acataacagaaatggagtattaccgtgagaagctgaagaatgatgaagtcatcagtgatgctgtgccacttcgacagcgacttcctgaaccagatactga |
52514803 |
T |
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| Q |
113 |
catgttgaatgctgaggcagactctcttcaaactccggagcagagtagttcggacggaagtgatgactatgaagatgataaggcgaaggagaaagacttt |
212 |
Q |
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| T |
52514802 |
catgttgaatgctgaggcagactctcttcaaactccggagcagagtagtttggacggaagtgatgactatgaagatgataaggcgaaggagaaagacttt |
52514703 |
T |
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| Q |
213 |
agtgtggatccgttgcctgttatagggcttg |
243 |
Q |
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||||||||| | |||||||||||||| |||| |
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| T |
52514702 |
agtgtggattcattgcctgttataggacttg |
52514672 |
T |
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