View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_500 (Length: 243)
Name: NF10145A_low_500
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_500 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 8293848 - 8293621
Alignment:
| Q |
7 |
ataaaaacaacagaaacgtgtacattgcagaaactgataatcaatttaatcgtcacgagagaaaacaatactaacctaactattaacatactaatattct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8293848 |
ataaaaacaacagaaacgtgtacattgcagaaactgataatcaatttaatcgtcacgagagaaaacaatactaacctaactattaacatactaatattct |
8293749 |
T |
|
| Q |
107 |
acatttgttattnnnnnnntagcacctaaaccagagatgcaattaattatatggagatcaaatgcacatgacacggacgctatacaaaacgcagcaacaa |
206 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8293748 |
acatttgttattaaaaaaatagcacctaaaccagagatgcaattaattatatggagatcaaatgcacatgacacggacgctatacaaaacgcagcaacaa |
8293649 |
T |
|
| Q |
207 |
aatatctggaatcagagaaattaacacg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
8293648 |
aatatctggaatcagagaaattaacacg |
8293621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University