View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_503 (Length: 243)
Name: NF10145A_low_503
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_503 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 30456074 - 30455873
Alignment:
| Q |
24 |
tagtccaagataaagcatggacaaataaattcggcggcgtgataaaagtaaaatccaaccaccttatcacctccgaccaaactttcgaaacccactcaca |
123 |
Q |
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| T |
30456074 |
tagtccaacataaagcatggacaaataaattcgacggcatgataaaagtaaaatccaaccaccttatcacctccgaccaaactttcgaaacccactcaca |
30455975 |
T |
|
| Q |
124 |
atgaagaaagagatgagtcatcgactcatcaccaccctcacaaaacacacaccttttagattcctccacccccaaaagatttctcttagcaagattgatt |
223 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30455974 |
atgaagaaagagatgagtcatcgattcatcaccaccctcacaaaacacacaccttttagattcctccacccccaaaagatttttcttagcaagattgatt |
30455875 |
T |
|
| Q |
224 |
tt |
225 |
Q |
| |
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|| |
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| T |
30455874 |
tt |
30455873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 5745916 - 5745743
Alignment:
| Q |
46 |
aaataaattcggcggcgtgataaaagtaaaatccaaccaccttatcacctccgaccaaactttcgaaacccactcacaatgaagaaagagatgagtcatc |
145 |
Q |
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| T |
5745916 |
aaataaattaggcggggtgataagattaaaattcaacaaccgcataacctctctccaaactttcgaaacccaactacaatgaagaaaaagatgaattgtc |
5745817 |
T |
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| Q |
146 |
gactcatcaccaccctcacaaaacacacaccttttagattcctccacccccaaaagatttctcttagcaagatt |
219 |
Q |
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| T |
5745816 |
gattcttccccttcatcacaaaacacacaccttttagattcatcctcccgcaatagacttctcttcgcaagatt |
5745743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 5782875 - 5782702
Alignment:
| Q |
46 |
aaataaattcggcggcgtgataaaagtaaaatccaaccaccttatcacctccgaccaaactttcgaaacccactcacaatgaagaaagagatgagtcatc |
145 |
Q |
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||||||||| ||||| ||||||| | |||||| |||| ||| || ||||| |||||||||||||||||| |||||||||||| |||||| | || |
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| T |
5782875 |
aaataaattaggcggggtgataagattaaaattcaacaaccgcataacctctctccaaactttcgaaacccaactacaatgaagaaaaagatgaattgtc |
5782776 |
T |
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| Q |
146 |
gactcatcaccaccctcacaaaacacacaccttttagattcctccacccccaaaagatttctcttagcaagatt |
219 |
Q |
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|| || || || | |||||||||||||||||||||||||| ||| ||| ||| ||| ||||||| |||||||| |
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| T |
5782775 |
gattcttccccttcatcacaaaacacacaccttttagattcatcctcccgcaatagacttctcttcgcaagatt |
5782702 |
T |
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