View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_507 (Length: 242)

Name: NF10145A_low_507
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_507
NF10145A_low_507
[»] chr7 (4 HSPs)
chr7 (7-240)||(41255955-41256188)
chr7 (8-240)||(19217044-19217276)
chr7 (7-242)||(15891887-15892122)
chr7 (28-238)||(25010987-25011197)
[»] chr2 (8 HSPs)
chr2 (7-238)||(30213395-30213626)
chr2 (7-240)||(17310991-17311224)
chr2 (7-232)||(38621400-38621625)
chr2 (8-240)||(29809821-29810053)
chr2 (58-238)||(23937521-23937702)
chr2 (55-230)||(26264300-26264475)
chr2 (39-242)||(10925647-10925850)
chr2 (121-159)||(21196866-21196904)
[»] chr1 (7 HSPs)
chr1 (7-237)||(44711584-44711814)
chr1 (7-240)||(50516803-50517038)
chr1 (7-237)||(33803239-33803469)
chr1 (8-152)||(45909343-45909487)
chr1 (66-159)||(5959938-5960031)
chr1 (40-94)||(10549329-10549383)
chr1 (39-159)||(16766312-16766432)
[»] chr5 (7 HSPs)
chr5 (7-240)||(20235145-20235378)
chr5 (8-239)||(34832415-34832646)
chr5 (14-202)||(38966473-38966661)
chr5 (7-129)||(25761720-25761842)
chr5 (14-159)||(31048926-31049073)
chr5 (14-94)||(31044271-31044351)
chr5 (42-94)||(31059641-31059693)
[»] chr8 (4 HSPs)
chr8 (7-240)||(9139054-9139287)
chr8 (10-240)||(23254652-23254882)
chr8 (7-242)||(755562-755791)
chr8 (152-242)||(23709163-23709253)
[»] chr3 (3 HSPs)
chr3 (7-240)||(52970934-52971167)
chr3 (8-98)||(48094748-48094838)
chr3 (166-242)||(6160699-6160777)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 41255955 - 41256188
Alignment:
Q  7 ctgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtacttt 106  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  41255955 ctgaaatgaagcatgtattgcggtatgttgcaactctagcatgttattaacggattgccagtttgtactcaaatcacccatactactactcaggtacttt 41256054  T
Q  107 ttaaaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagat 206  Q
    |||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41256055 ttaaacgaagcgtgtgcagattcagctctattttttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccggat 41256154  T
Q  207 tcaaaattgtcttttcaacatattccaaaaactt 240  Q
    ||||||||||||||||||||||||||||||||||    
T  41256155 tcaaaattgtcttttcaacatattccaaaaactt 41256188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 19217276 - 19217044
Alignment:
Q  8 tgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtactttt 107  Q
    ||||||||||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  19217276 tgaaatgaagcatttattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaaatactttt 19217177  T
Q  108 taaaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagatt 207  Q
    | |||| | ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | |||     
T  19217176 tcaaccgaacgtgtgcagattcaactctgtttgttgtagtattccccatatgaaggtgtttgtcaacccaaaacctcacaaaattctccttaaacggatc 19217077  T
Q  208 caaaattgtcttttcaacatattccaaaaactt 240  Q
    |||||||||||||||||||||||||||||||||    
T  19217076 caaaattgtcttttcaacatattccaaaaactt 19217044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 15892122 - 15891887
Alignment:
Q  7 ctgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtacttt 106  Q
    |||||| |||||||||||||| |||| ||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||||  ||||||    
T  15892122 ctgaaacgaagcatgtattgcggtatgttgcaactctagcatctcatgaacggatttccagtttgtacttaaatcacccatactactactcagatacttt 15892023  T
Q  107 ttaaaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagat 206  Q
    || |||| |||||||| |||||||| ||| ||||||||| |||||||||||||||  ||| ||| ||||||| |||||||||||||||||||||||  ||    
T  15892022 ttcaacctagcgtgtgtagattcaattctgtttgttgtactattccccatatgaatatttctgtcaacccaatacctcacaaacttctccttaaccgaat 15891923  T
Q  207 tcaaaattgtcttttcaacatattccaaaaacttag 242  Q
     ||||||||||||||||||||| |||||||||||||    
T  15891922 ccaaaattgtcttttcaacataatccaaaaacttag 15891887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 25010987 - 25011197
Alignment:
Q  28 agtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtactttttaaaccaagcgtgtgcagat 127  Q
    ||||||||| ||||||| |||||| | ||| |||| ||||||||||||||||| || |||||||||| |||  |||||||| ||||    ||||||| ||    
T  25010987 agtatattgtaactctaacatgttgtgaacagatttccagtttgtacttaaattactcatactactaatcagatacttttttaaccggctgtgtgcaaat 25011086  T
Q  128 tcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagattcaaaattgtcttttcaacat 227  Q
    ||| || | |||||||||||||| | |||||| | |  ||  |  ||||||||| || |||  |||||||| || ||| |  |||||||  |||||||||    
T  25011087 tcagctatgtttgttgtagtatttctcatatgcatgacttgattgacccaaaacttcccaactttctccttcacgagacttgaaattgtagtttcaacat 25011186  T
Q  228 attccaaaaac 238  Q
    |||||||||||    
T  25011187 attccaaaaac 25011197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 30213626 - 30213395
Alignment:
Q  7 ctgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtacttt 106  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||| |||||||||||||||||||||| |||||||    
T  30213626 ctgaaatgaagcatgtattgcagtatgttgcaactctaccatgttatgaacagattgccagtttgtactcaaatcacccatactactactcaggtacttt 30213527  T
Q  107 ttaaaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagat 206  Q
    || |||| |||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  30213526 ttcaaccgagcgtgtgcagattcagctctgtttgttgtagtattccccatatgaagatttttgtcaacccaaaacctcacaaacttctccttaaccagat 30213427  T
Q  207 tcaaaattgtcttttcaacatattccaaaaac 238  Q
     |||||||||||||||||||||||||||||||    
T  30213426 ccaaaattgtcttttcaacatattccaaaaac 30213395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 17310991 - 17311224
Alignment:
Q  7 ctgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtacttt 106  Q
    ||||||||||||||||||||| |||| |||||||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||  ||||||    
T  17310991 ctgaaatgaagcatgtattgcggtatgttgcaactctagaatgttatgaacggattgctagtttgtactcaaatcacccatactactactcaaatacttt 17311090  T
Q  107 ttaaaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagat 206  Q
    || |||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||    
T  17311091 ttcaaccgagcgtgtgcagattcagctctatttattgtagtattccccatatgaaggtttttgtcaacccaaaacctcataaacttctccttaaccggat 17311190  T
Q  207 tcaaaattgtcttttcaacatattccaaaaactt 240  Q
     |||||||||||||||||||||||||||||||||    
T  17311191 ccaaaattgtcttttcaacatattccaaaaactt 17311224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 38621625 - 38621400
Alignment:
Q  7 ctgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtacttt 106  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  38621625 ctgaaatgaagcatttattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaggtacttt 38621526  T
Q  107 ttaaaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagat 206  Q
     | |||| || ||||||||||||| |||| ||| |||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||    
T  38621525 ctcaaccgagtgtgtgcagattcagctctgtttattgtagtattccccatatgaaggtttttttcaacctaaaacctcacaaacttctccttaaccggat 38621426  T
Q  207 tcaaaattgtcttttcaacatattcc 232  Q
     |||||||||||||||||||||||||    
T  38621425 ccaaaattgtcttttcaacatattcc 38621400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 29810053 - 29809821
Alignment:
Q  8 tgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtactttt 107  Q
    ||||||||| |||||||||| |||| |||||||| ||||||||||| |||||||| |||||||||||| |||| |||||||||||||||||  |||||||    
T  29810053 tgaaatgaatcatgtattgcggtatgttgcaactttagcatgttatgaacggatttccagtttgtactcaaatgacccatactactactcaaatactttt 29809954  T
Q  108 taaaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagatt 207  Q
    | |||  |||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||     
T  29809953 tcaacagagcgtgtgcagattcagctctgtttgttttagtattccccatatgaaggtttttgtcaacccaaaacctcacaaacttcttcttaaccggatc 29809854  T
Q  208 caaaattgtcttttcaacatattccaaaaactt 240  Q
    |||||||||||||||||||||||||||||||||    
T  29809853 caaaattgtcttttcaacatattccaaaaactt 29809821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 58 - 238
Target Start/End: Original strand, 23937521 - 23937702
Alignment:
Q  58 ggattgccagtttgtacttaaatcacccatactactactcatgtactttttaaaccaagcgtgtgcagattcaactctatttgttgtagtattcccc-at 156  Q
    |||||| ||||||||||||| |||| ||||||||||| |||  |||||||| |||| || |||||||||||| ||||| |||||||||||||||||| ||    
T  23937521 ggattgtcagtttgtacttagatcatccatactactattcagatactttttcaaccgagtgtgtgcagattcgactctgtttgttgtagtattcccccat 23937620  T
Q  157 atgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagattcaaaattgtcttttcaacatattccaaaaac 238  Q
    |||||||||||||| || |||||||||||||||||||||||||||  ||| ||||||||||||||||||||| |||||||||    
T  23937621 atgaaggtttttgtcaatccaaaacctcacaaacttctccttaactggatccaaaattgtcttttcaacataatccaaaaac 23937702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 26264475 - 26264300
Alignment:
Q  55 aacggattgccagtttgtacttaaatcacccatactactactcatgtactttttaaaccaagc-gtgtgcagattcaactctatttgttgtagtattccc 153  Q
    |||||||| || |||||||||| |||| ||||||||| || |||  |||||||| ||| | || ||||||| |||| ||||| |||||||||||||||||    
T  26264475 aacggatttcctgtttgtacttgaatcgcccatactattagtcagatactttttcaac-atgctgtgtgcatattcgactctgtttgttgtagtattccc 26264377  T
Q  154 catatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagattcaaaattgtcttttcaacatatt 230  Q
    |||||| |||  ||| |  ||||||||| |||||| | ||||||| ||| ||  ||||||||| |||||||||||||    
T  26264376 catatgcaggactttattgacccaaaacttcacaatcatctccttcacctgacccaaaattgtattttcaacatatt 26264300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 242
Target Start/End: Complemental strand, 10925850 - 10925647
Alignment:
Q  39 actctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtactttttaaaccaagcgtgtgcagattcaactctatt 138  Q
    ||||||||||||| | |||||| | ||||||||||||||||||||||| |||||||  ||  ||||||||  |||     |||||||||| | |||| ||    
T  10925850 actctagcatgttgtgaacggagttccagtttgtacttaaatcacccacactactagccagatactttttcgaccggttatgtgcagatttagctctgtt 10925751  T
Q  139 tgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagattcaaaattgtcttttcaacatattccaaaaac 238  Q
    ||||||||||||||  |||||   |  ||| |  ||||||||| |||||| ||||||||| | ||||  |||||||   |||||||||||||||||||||    
T  10925750 tgttgtagtattccttatatgtgtgactttatttacccaaaacttcacaaccttctccttcatcagacccaaaatttcattttcaacatattccaaaaac 10925651  T
Q  239 ttag 242  Q
    ||||    
T  10925650 ttag 10925647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 21196866 - 21196904
Alignment:
Q  121 tgcagattcaactctatttgttgtagtattccccatatg 159  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  21196866 tgcaaattcaactctgtttgttgtagtattccccatatg 21196904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 44711584 - 44711814
Alignment:
Q  7 ctgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtacttt 106  Q
    ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  44711584 ctgaaatgaagcatgtattgtggtatgttgcaactctagcatgttattaacggattgccagtttgtactcaaattacccatactactactcaggtacttt 44711683  T
Q  107 ttaaaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagat 206  Q
    || |||| |||| |||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44711684 ttcaaccgagcgagtgcagattcaactttgtttgttgtagtattccccatatgaaggtttttgtcaacccaaaacctcacaaacttctccttaaccagat 44711783  T
Q  207 tcaaaattgtcttttcaacatattccaaaaa 237  Q
     ||||||||||||||||||||||||||||||    
T  44711784 ccaaaattgtcttttcaacatattccaaaaa 44711814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 50517038 - 50516803
Alignment:
Q  7 ctgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtacttt 106  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  50517038 ctgaaatgaagcatgtattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaggtacttt 50516939  T
Q  107 ttaaaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaaccc--aaaacctcacaaacttctccttaaccag 204  Q
    || |||| | |||||||||||||| || | |||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||| || |    
T  50516938 ttcaaccgatcgtgtgcagattcagctatgtttgttgtagtattccccatatgaaggtttttgtcaacccaaaaaacctcacaaacttctccttatccgg 50516839  T
Q  205 attcaaaattgtcttttcaacatattccaaaaactt 240  Q
    || |||||||||||||||||||||||||||||||||    
T  50516838 atccaaaattgtcttttcaacatattccaaaaactt 50516803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 7 - 237
Target Start/End: Complemental strand, 33803469 - 33803239
Alignment:
Q  7 ctgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtacttt 106  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||| ||| |||| ||||||| |||| ||||||||||||||||||||||   |||||    
T  33803469 ctgaaatgaagcatgtattgcggtatgttgcaactctagcatgttatgaacagatttccagtttttactcaaatcacccatactactactcaaacacttt 33803370  T
Q  107 ttaaaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagat 206  Q
    || |||| |||||| ||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  33803369 ttcaaccgagcgtgcgcagattcagctctgtttgttgtagtattccccatatgaaggtttttgtcaacccaaaacctcacaaacttctccttaaccggat 33803270  T
Q  207 tcaaaattgtcttttcaacatattccaaaaa 237  Q
     ||||||||||||||||||||||||||||||    
T  33803269 ccaaaattgtcttttcaacatattccaaaaa 33803239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 45909343 - 45909487
Alignment:
Q  8 tgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtactttt 107  Q
    ||||||||| |||||| ||| |||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |||    
T  45909343 tgaaatgaaacatgtactgcggtatgttgcaactctagcatgttattaacagattgccagtttgtactcaaatcacccatactactactcaggtaccttt 45909442  T
Q  108 taaaccaagcgtgtgcagattcaactctatttgttgtagtattcc 152  Q
    | |||| |||||||||||||||| |||| ||||||||||||||||    
T  45909443 tcaaccgagcgtgtgcagattcagctctgtttgttgtagtattcc 45909487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 159
Target Start/End: Complemental strand, 5960031 - 5959938
Alignment:
Q  66 agtttgtacttaaatcacccatactactactcatgtactttttaaaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatg 159  Q
    |||||||||||||||||| ||| |||||| |||| |||||||| ||||    ||||||| ||||| ||||||||||||||||||| ||||||||    
T  5960031 agtttgtacttaaatcactcatgctactagtcatatactttttcaaccggttgtgtgcaaattcagctctatttgttgtagtatttcccatatg 5959938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 10549383 - 10549329
Alignment:
Q  40 ctctagcatgttattaacggattgccagtttgtacttaaatcacccatactacta 94  Q
    |||||||||||| | |||||||| |||||||||||||||||||| ||||||||||    
T  10549383 ctctagcatgttgtgaacggattcccagtttgtacttaaatcactcatactacta 10549329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 159
Target Start/End: Original strand, 16766312 - 16766432
Alignment:
Q  39 actctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtactttttaaaccaagcgtgtgcagattcaactctatt 138  Q
    ||||||||||||  | |||||||| ||||||||||||||||||||||||  |  || |||  || ||||| ||||    || ||||||||||||||| ||    
T  16766312 actctagcatgtcgtgaacggattcccagtttgtacttaaatcacccatgatgttagtcagatagtttttcaaccggttgtatgcagattcaactctgtt 16766411  T
Q  139 tgttgtagtattccccatatg 159  Q
     |||||||||||| |||||||    
T  16766412 agttgtagtattctccatatg 16766432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 20235145 - 20235378
Alignment:
Q  7 ctgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtacttt 106  Q
    ||||||||||||||||||||| |||| || ||||||||| ||||||| ||||||||||||||||||||| |||||||||||| |||||||||  ||||||    
T  20235145 ctgaaatgaagcatgtattgcggtatgtttcaactctagtatgttatgaacggattgccagtttgtactcaaatcacccatattactactcaattacttt 20235244  T
Q  107 ttaaaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagat 206  Q
    || |||  |||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  20235245 ttcaactgagcgtgtgcagattcagctctgtttgttgtagtattccccatatgaaggtttttgtcaacccaaaacctcacaaacttctccttaaccggat 20235344  T
Q  207 tcaaaattgtcttttcaacatattccaaaaactt 240  Q
     |||||||||||||||||||||||||||||||||    
T  20235345 ccaaaattgtcttttcaacatattccaaaaactt 20235378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 34832415 - 34832646
Alignment:
Q  8 tgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtactttt 107  Q
    |||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||    
T  34832415 tgaaatgaagcatgtattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatctcccatactactactcaagtactttt 34832514  T
Q  108 taaaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagatt 207  Q
    | || |||||||||| ||||||| |||||||| |||||||||||| ||||||||||||||||| ||||||||| |||| ||||||||| |||||| |||     
T  34832515 tcaaacaagcgtgtgaagattcagctctatttattgtagtattcctcatatgaaggtttttgtcaacccaaaagctcataaacttctctttaaccggatc 34832614  T
Q  208 caaaattgtcttttcaacatattccaaaaact 239  Q
    ||||||| ||||||||||||||||||||||||    
T  34832615 caaaattttcttttcaacatattccaaaaact 34832646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 38966661 - 38966473
Alignment:
Q  14 gaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtactttttaaacc 113  Q
    |||||||||||| | |||| ||||||||||||||||| || ||||| || |||||||||||| ||||||||||||||||||||||  |||||||| ||||    
T  38966661 gaagcatgtattacggtatgttgcaactctagcatgtcatgaacggctttccagtttgtactaaaatcacccatactactactcagatactttttcaacc 38966562  T
Q  114 aagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaacc 202  Q
     |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  38966561 gagcgtgtgcatattcagctctatttgttgtagtattccccatatgaaggtctttgtcaacccaaaacctcacaaacttctccttaacc 38966473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 25761842 - 25761720
Alignment:
Q  7 ctgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtacttt 106  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  25761842 ctgaaatgaagcatgtattgcggtattttgcaactctaccatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaggtacttt 25761743  T
Q  107 ttaaaccaagcgtgtgcagattc 129  Q
    || |||| |||||||||||||||    
T  25761742 ttcaaccgagcgtgtgcagattc 25761720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 31048926 - 31049073
Alignment:
Q  14 gaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactac--tactcatgtactttttaaa 111  Q
    |||| |||||||  ||||| |||  ||||||||||||| | || ||| | ||| ||||||||||| |||||||||||||  || | |  |||||||| ||    
T  31048926 gaagaatgtatttgagtatgttgtgactctagcatgttgtgaatggagttccattttgtacttaattcacccatactactatagtaagatacttttttaa 31049025  T
Q  112 ccaagcgtgtgcagattcaactctatttgttgtagtattccccatatg 159  Q
    ||    ||||||| ||||  |||| |||||||||||||||||||||||    
T  31049026 ccgtctgtgtgcatattctgctctgtttgttgtagtattccccatatg 31049073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 31044271 - 31044351
Alignment:
Q  14 gaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactacta 94  Q
    ||||||||||||  ||||| |||  ||||||||||||| | |  ||| | ||| ||||||||||| |||||||||||||||    
T  31044271 gaagcatgtatttgagtatgttgtgactctagcatgttgtgagtggagttccattttgtacttaattcacccatactacta 31044351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 31059641 - 31059693
Alignment:
Q  42 ctagcatgttattaacggattgccagtttgtacttaaatcacccatactacta 94  Q
    |||||||||| | |||||| | ||| ||||||||||| |||||||||||||||    
T  31059641 ctagcatgttgtgaacggagttccattttgtacttaattcacccatactacta 31059693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 9139054 - 9139287
Alignment:
Q  7 ctgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtacttt 106  Q
    |||||||||| |||||||||| |||| |||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||||||||||  ||||||    
T  9139054 ctgaaatgaaacatgtattgcggtatgttgcaactctagcatgttatgaacagattgccagtttgtactcaaatcactcatactactactcaaatacttt 9139153  T
Q  107 ttaaaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagat 206  Q
    || || | |||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  9139154 ttcaatcgagcgtgtgcacattcaactctgtttgttgtagaattccccatatgaaggtttttgtcaacccaaaacctcacaaacttctccttaaccaaat 9139253  T
Q  207 tcaaaattgtcttttcaacatattccaaaaactt 240  Q
     |||||||||||||||||||||||||||||||||    
T  9139254 ccaaaattgtcttttcaacatattccaaaaactt 9139287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 23254882 - 23254652
Alignment:
Q  10 aaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtacttttta 109  Q
    ||||||||||||| |||| ||||  ||||||||||||||||||| ||||||||||||||||||||| |||||| | |||||||||||||  |||||| |     
T  23254882 aaatgaagcatgttttgcggtatgatgcaactctagcatgttatgaacggattgccagtttgtactcaaatcatctatactactactcaaatactttctc 23254783  T
Q  110 aaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagattca 209  Q
    || | ||||| | |||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||    
T  23254782 aatcgagcgtctacagattcagctctgtttgttgtagtattccccatatgaaggtttttgtcaacccaaaacctcacaaacttctccttaaccggatcca 23254683  T
Q  210 aaattgtcttttcaacatattccaaaaactt 240  Q
    ||||| |||||||||||||||||||||||||    
T  23254682 aaattatcttttcaacatattccaaaaactt 23254652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 755791 - 755562
Alignment:
Q  7 ctgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtacttt 106  Q
    |||||| |||||||||||| | |||| |||||||| |||||||| || ||||||||  ||||||||||| |||| |||||||||       | |||||||    
T  755791 ctgaaacgaagcatgtattacggtatgttgcaactatagcatgtcatgaacggatttgcagtttgtactcaaataacccatactt------aggtacttt 755698  T
Q  107 ttaaaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagat 206  Q
    || |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  755697 ttcaaccgagcgtgtgcagattcagctctatttgttgtagtattccccatatgaaggtttttgtcaacccaaaacctcacaaacttctccttaaccggat 755598  T
Q  207 tcaaaattgtcttttcaacatattccaaaaacttag 242  Q
     ||||||||||||||||||||| |||| ||||||||    
T  755597 ccaaaattgtcttttcaacataatccagaaacttag 755562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 23709163 - 23709253
Alignment:
Q  152 cccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagattcaaaattgtcttttcaacatattccaaaaacttag 242  Q
    ||||||||||||||||||| ||||||||| |||| ||| |||||||||||  ||| ||| ||||||||||||| ||| |||||||||||||    
T  23709163 cccatatgaaggtttttgtcaacccaaaatctcataaatttctccttaactggatccaacattgtcttttcaaaataatccaaaaacttag 23709253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 52970934 - 52971167
Alignment:
Q  7 ctgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactcatgtacttt 106  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||  |||||||| |||||||||||| ||||||||||||||||||||||  | ||||    
T  52970934 ctgaaatgaagcatgtattgcggtatgttgcaactctagcatgttacaaacggatttccagtttgtactcaaatcacccatactactactcaaatgcttt 52971033  T
Q  107 ttaaaccaagcgtgtgcagattcaactctatttgttgtagtattccccatatgaaggtttttgtgaacccaaaacctcacaaacttctccttaaccagat 206  Q
    || |||| ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||    
T  52971034 ttcaaccgagcgtctgcagattcagctctgtttgttgtagtattccccatatgaaggtttttgtcaacccaaaacctcacaaacttctccttgaccggat 52971133  T
Q  207 tcaaaattgtcttttcaacatattccaaaaactt 240  Q
     ||||||||||||||||||||||| |||||||||    
T  52971134 ccaaaattgtcttttcaacatatttcaaaaactt 52971167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 48094838 - 48094748
Alignment:
Q  8 tgaaatgaagcatgtattgcagtatattgcaactctagcatgttattaacggattgccagtttgtacttaaatcacccatactactactca 98  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  48094838 tgaaatgaagcatgtattgcggtatgttgcaactctagcatgttattaacggattgccagtttgtactcaaatcacctatactactactca 48094748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 6160699 - 6160777
Alignment:
Q  166 tttgtgaacccaaaacctcacaaa--cttctccttaaccagattcaaaattgtcttttcaacatattccaaaaacttag 242  Q
    ||||| |||||||||||||||| |  ||||||||||||| |||  |||||||||||||||||||| |||||||||||||    
T  6160699 tttgtcaacccaaaacctcacatatacttctccttaaccggatcaaaaattgtcttttcaacataatccaaaaacttag 6160777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University