View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_508 (Length: 242)

Name: NF10145A_low_508
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_508
NF10145A_low_508
[»] chr7 (8 HSPs)
chr7 (9-205)||(26617737-26617933)
chr7 (13-154)||(39865471-39865612)
chr7 (13-205)||(33190302-33190494)
chr7 (78-205)||(14719370-14719501)
chr7 (54-205)||(7578536-7578687)
chr7 (22-103)||(14719287-14719367)
chr7 (8-102)||(37479524-37479617)
chr7 (87-205)||(35339023-35339141)
[»] chr4 (16 HSPs)
chr4 (21-205)||(52311220-52311404)
chr4 (13-181)||(54687659-54687826)
chr4 (30-175)||(20275938-20276082)
chr4 (13-175)||(26997226-26997388)
chr4 (45-205)||(5350929-5351089)
chr4 (13-181)||(54678539-54678709)
chr4 (17-202)||(17365674-17365858)
chr4 (13-175)||(26992029-26992194)
chr4 (13-105)||(6408036-6408127)
chr4 (13-104)||(22746635-22746726)
chr4 (43-205)||(27360193-27360354)
chr4 (13-205)||(12746523-12746715)
chr4 (13-67)||(14000179-14000231)
chr4 (80-202)||(18902113-18902234)
chr4 (16-67)||(13994875-13994924)
chr4 (79-135)||(20355099-20355155)
[»] chr1 (6 HSPs)
chr1 (9-182)||(40274356-40274530)
chr1 (12-175)||(40279148-40279311)
chr1 (13-184)||(29530120-29530292)
chr1 (20-184)||(29547775-29547940)
chr1 (41-204)||(28201654-28201817)
chr1 (54-136)||(27417427-27417509)
[»] chr5 (8 HSPs)
chr5 (13-205)||(16633255-16633446)
chr5 (13-175)||(19779954-19780116)
chr5 (21-175)||(19479453-19479607)
chr5 (12-175)||(19783201-19783363)
chr5 (78-205)||(17604690-17604821)
chr5 (41-103)||(17604824-17604886)
chr5 (162-205)||(21575046-21575089)
chr5 (113-205)||(35105030-35105122)
[»] chr3 (8 HSPs)
chr3 (14-127)||(8832533-8832646)
chr3 (8-139)||(39875817-39875946)
chr3 (13-126)||(44126710-44126823)
chr3 (83-205)||(21587185-21587306)
chr3 (13-65)||(13921708-13921758)
chr3 (89-205)||(20458819-20458933)
chr3 (132-205)||(20463226-20463299)
chr3 (13-97)||(7873835-7873918)
[»] chr2 (3 HSPs)
chr2 (41-205)||(19912279-19912443)
chr2 (128-205)||(34111054-34111131)
chr2 (79-201)||(45276354-45276475)
[»] chr8 (6 HSPs)
chr8 (12-104)||(17909890-17909983)
chr8 (13-72)||(10739137-10739196)
chr8 (13-72)||(15007178-15007236)
chr8 (13-68)||(36911928-36911983)
chr8 (24-105)||(10734068-10734149)
chr8 (28-152)||(12145639-12145764)
[»] chr6 (1 HSPs)
chr6 (13-65)||(23599934-23599986)
[»] scaffold0248 (1 HSPs)
scaffold0248 (13-67)||(16258-16312)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 26617737 - 26617933
Alignment:
Q  9 atcaaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagat 108  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||  ||||||    
T  26617737 atcaaagaagaggaagaagaagatgaaaacactttgtattattctcttcacaagtgtgtctttacaattcaatatgagccctatttataggattcaagat 26617836  T
Q  109 gaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617837 gaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 26617933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 39865612 - 39865471
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 112  Q
    |||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||  ||| | ||||||| ||||||||||| ||||||||||| |    
T  39865612 aagaagaggaaggagaagatgaaagcactttgtattattctcttcaagagtgtgtctttgcaatacgatatgagccctatttatagtacacaagatgagt 39865513  T
Q  113 aagtgagtgatcaagataattaaggtccactaactattcact 154  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  39865512 aagtgagtgatcaagacaattaaggtccactaactattcact 39865471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 33190302 - 33190494
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||| |||| |||||  ||||||||||| |    
T  33190302 aagaagaggaaggagaagatgaaagcactttgtattattctcttcacaagtgtgtctttgcaatacaatatgagaccta-ttataatacacaagatgagt 33190400  T
Q  113 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagac-taaggatggaaatccactaa 205  Q
    |||||||||||||||  || ||||||||| |||||||||||| |  |||||   ||||||||| ||||||||| |||||||| | |||||||||    
T  33190401 aagtgagtgatcaaggcaactaaggtccagtaactattcacttaccaatggaaattataggaaggtgaaagacttaaggatgtacatccactaa 33190494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 14719370 - 14719501
Alignment:
Q  78 caatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaac----tattcactcattaatgggggttatagg 173  Q
    |||||||||||||||||||| || |||| |||||||  ||||||||||| |||||||||||||||||||    |||||||||| ||||||||||||||||    
T  14719370 caatatgagtcctatttataagatacaaaatgaatagctgagtgatcaaaataattaaggtccactaactatatattcactcactaatgggggttatagg 14719469  T
Q  174 aaagtgaaagactaaggatggaaatccactaa 205  Q
    || ||| ||||||||||| ||| |||||||||    
T  14719470 aaggtggaagactaaggacggacatccactaa 14719501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 205
Target Start/End: Complemental strand, 7578687 - 7578536
Alignment:
Q  54 cttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcac 153  Q
    |||| |||||||||||||| | |  |||||||||||||||||||||| |||| || |  |||||| |||||||  ||||||||| ||||| || || ||     
T  7578687 cttctcaagtgtgtctttatactataatatgagtcctatttataggatacaatataagcaagtgaatgatcaaagtaattaaggaccactgaccatccat 7578588  T
Q  154 tcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 205  Q
    ||| | |||||  |||| |||| ||| ||||||||||||||| |||||||||    
T  7578587 tcacttatgggacttatgggaaggtggaagactaaggatggacatccactaa 7578536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 14719287 - 14719367
Alignment:
Q  22 aagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacac 103  Q
    |||||||||||||||||  ||||||||||||||||||||||||||  |||| | | ||||||||| ||||||||||||||||    
T  14719287 aagaagaagatgaaagct-tttgtattattctcttcacaagtgtgcatttacactacaatatgagccctatttataggacac 14719367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 37479524 - 37479617
Alignment:
Q  8 aatcaaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggaca 102  Q
    |||||||||| | |||||||| || ||||||  ||||||||||||||||||||| ||| |||||| | | ||||||  |||||||||||||||||    
T  37479524 aatcaaagaaaaagaagaagatgaagaaagct-tttgtattattctcttcacaaatgtttctttacattgcaatataggtcctatttataggaca 37479617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 35339023 - 35339141
Alignment:
Q  87 tcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagact 186  Q
    |||||||||||||| |||| ||||  | ||||   |||||  ||||||||| ||| |||| || || ||| | ||||| |||||||||| ||| ||||||    
T  35339023 tcctatttataggatacaatatgagcatgtgaaatatcaaagtaattaaggaccattaaccatccattcacttatgggagttataggaaggtggaagact 35339122  T
Q  187 aaggatggaaatccactaa 205  Q
    || |||||| |||||||||    
T  35339123 aatgatggacatccactaa 35339141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 52311220 - 52311404
Alignment:
Q  21 gaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagt 120  Q
    |||||||| ||||||| || ||||||||||||||||||||| |||||||||| | | |||||||| |||||||||||||||||||||||| |||||||||    
T  52311220 gaagaagatgatgaaaacattttgtattattctcttcacaaatgtgtctttacactgcaatatgaatcctatttataggacacaagatgactaagtgagt 52311319  T
Q  121 gatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 205  Q
    ||||||   |||||||||||||||||||||||||||  ||| ||||||||||||| ||| ||||||| ||||||| || ||||||    
T  52311320 gatcaaagaaattaaggtccactaactattcactcaccaataggggttataggaaggtggaagactagggatggacattcactaa 52311404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 54687659 - 54687826
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 112  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||  ||||||||||| | ||||||||| |    
T  54687659 aagaagaggaaggagaagatgaaatcactttgtattattctcttcacaagtgtatctttataatacaatatgaaccctatttatagtatacaagatgagt 54687758  T
Q  113 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaa 181  Q
    |||| ||||||||||| |||| |||||| |||| |||||||| | |||| |||||||||||||||||||    
T  54687759 aagtaagtgatcaagaaaattgaggtcccctaattattcacttactaat-ggggttataggaaagtgaa 54687826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 20276082 - 20275938
Alignment:
Q  30 gatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagat 129  Q
    ||||||||| |||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||      
T  20276082 gatgaaagc-ctttgtattattctgttcacatgtgtgtctttacaatacaatatgagtcctatttatagtacataagatgagtaagtgagtgatcaaggc 20275984  T
Q  130 aattaaggtccactaactattcactcattaatgggggttataggaa 175  Q
    | ||||||||||||||||||||||| | ||||||  ||||||||||    
T  20275983 agttaaggtccactaactattcacttactaatggaagttataggaa 20275938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 26997388 - 26997226
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 112  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||  |||  |||||||||||||||||||| ||||||||||| |    
T  26997388 aagaagagaaaggagaagatgaaagcactttgtattattctcttcacaagtatgtctttgcaatataatatgagtcctatttatagtacacaagatgagt 26997289  T
Q  113 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 175  Q
    |||| |||| ||||    |||||||| |||| |||||||||| | ||||| | ||||||||||    
T  26997288 aagttagtgttcaaagctattaaggttcactgactattcacttactaatgagagttataggaa 26997226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 205
Target Start/End: Complemental strand, 5351089 - 5350929
Alignment:
Q  45 tattattctcttcacaagtgtgtctttag-aattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccact 143  Q
    ||||||||| |||||||||||||||||   |||  ||||||||||||||||||||||||||| |||| |||||| | |||||| ||||||||||||| ||    
T  5351089 tattattctattcacaagtgtgtctttttcaataaaatatgagtcctatttataggacacaaaatgagtaagtg-gcgatcaaaataattaaggtccgct 5350991  T
Q  144 aactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 205  Q
    ||||||||||||  |||||| | ||||||||| ||| ||||||||||||||| |||||||||    
T  5350990 aactattcactcgctaatggagattataggaaggtggaagactaaggatggacatccactaa 5350929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 54678539 - 54678709
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 112  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||||||  || |||||| |||  |||||||||||||||||||  ||||||||||| |    
T  54678539 aagaagaggaaggagaagatgaaaacactttttattattctcttcacaaacgtatctttacaatataatatgagtcctatttataatacacaagatgagt 54678638  T
Q  113 aagt--gagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaa 181  Q
    ||||  | ||||||||   ||||||||||||| ||||||||||| | ||| |||||||||||||| |||||    
T  54678639 aagtaagtgtgatcaatgaaattaaggtccaccaactattcacttaataacgggggttataggaaggtgaa 54678709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 17365858 - 17365674
Alignment:
Q  17 agaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagt 116  Q
    |||||||||||| | ||||| || ||||||||||| | |||||||  || |||||| | |  |||| ||| | ||||||||||||||||||||| |||||    
T  17365858 agaggaagaagatggtgaaaacattttgtattattttgttcacaaaggtttctttacactataata-gagccttatttataggacacaagatgagtaagt 17365760  T
Q  117 gagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccac 202  Q
    ||||||||||   ||||||||||||||||||||||||||| |||||  ||||||| |||| || ||||||||||||| | ||||||    
T  17365759 gagtgatcaaagaaattaaggtccactaactattcactcactaatgaaggttataagaaaatggaagactaaggatgaacatccac 17365674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 26992194 - 26992029
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattatt---ctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatg 109  Q
    |||||||||||  |||||||||||| |||||||||||||   |||||||||||| | |||||  |||  |||||||| ||||||||||| ||||  ||||    
T  26992194 aagaagaggaaagagaagatgaaagtactttgtattattattctcttcacaagtatatctttgcaatataatatgagccctatttatagtacacgggatg 26992095  T
Q  110 aataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 175  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||| | ||||| |  |||||||||    
T  26992094 aataagttagtgatcaaggcaattaaggtccactaactattcacttactaatgagatttataggaa 26992029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 6408127 - 6408036
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaa 105  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||   | ||||||  ||||||||||||||||||||    
T  6408127 aagaagaagaagaagaagatgaaag-attttgtattattctcttcacaagtgtgcctttactttgcaatataggtcctatttataggacacaa 6408036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 22746726 - 22746635
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacaca 104  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||||||| ||||| ||| | |  ||| |  |||||||||||||||||||    
T  22746726 aagacgaggaggaagaagatgaaagtactttgtattattctcttcacaagggtgtcattacattgtaatgtaggtcctatttataggacaca 22746635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 205
Target Start/End: Complemental strand, 27360354 - 27360193
Alignment:
Q  43 tgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccac 142  Q
    ||||||||| | |||||||| ||||||||| | |  ||||  |||||||||||||||| |||| ||||| |||||| |||||||  ||||||||| ||||    
T  27360354 tgtattatttttttcacaagcgtgtctttacactataatacaagtcctatttataggatacaatatgaacaagtgaatgatcaaagtaattaaggaccac 27360255  T
Q  143 taactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 205  Q
    |||| ||  | ||||| || || |||||||||| ||| |||||||  |||| | |||||||||    
T  27360254 taaccatctattcatttat-ggagttataggaaggtggaagactactgatgaacatccactaa 27360193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 12746523 - 12746715
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtc-tttagaattcaatatgagtcctatttataggacacaagatgaa 111  Q
    |||||||||| |||||||||||||| |  |||||||||||| |||| ||||||||| || | | |  |||||  || ||||||||||||| ||| ||||     
T  12746523 aagaagaggaggaagaagatgaaagtatattgtattattcttttcataagtgtgtcattcacattataatataggttctatttataggacgcaa-atgag 12746621  T
Q  112 taagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 205  Q
     |||||| |||||||  | ||||||| ||| ||| ||| || ||| |||| | ||||||||||| ||| |||| | |||||||| |||||||||    
T  12746622 caagtgaatgatcaaagtcattaaggaccattaagtatacattcactaatagtggttataggaaggtggaagattgaggatggacatccactaa 12746715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 14000231 - 14000179
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgt 67  Q
    |||||||||||||||| |||||||||  ||||| |||||||||||||||||||||    
T  14000231 aagaagaggaagaagatgatgaaagc--tttgtgttattctcttcacaagtgtgt 14000179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 18902113 - 18902234
Alignment:
Q  80 atatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtg 179  Q
    |||||||||  ||||||||||||||| ||||  ||||||  |||||| | |||||||| ||| |||  || || ||| |||||| ||||||||||| |||    
T  18902113 atatgagtcagatttataggacacaa-atgagcaagtgaaagatcaaaacaattaaggaccattaagcatccattcactaatggaggttataggaaggtg 18902211  T
Q  180 aaagactaaggatggaaatccac 202  Q
    ||||| |||||||| | ||||||    
T  18902212 aaagattaaggatgaacatccac 18902234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 13994924 - 13994875
Alignment:
Q  16 aagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgt 67  Q
    ||||||||||||| |||||||||  ||||| |||||||||||||||||||||    
T  13994924 aagaggaagaagatgatgaaagc--tttgtgttattctcttcacaagtgtgt 13994875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 20355099 - 20355155
Alignment:
Q  79 aatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaa 135  Q
    |||||||||||||||||||||| |||| ||||| || ||| |||||||  |||||||    
T  20355099 aatatgagtcctatttataggatacaatatgaacaactgaatgatcaaagtaattaa 20355155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 40274356 - 40274530
Alignment:
Q  9 atcaaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagat 108  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||| || ||||||||||  |||||||||    
T  40274356 atcaaagaagaggaaggagaagatgaaagcactttgtattattctcttcacaagtgtgtctttgcaatacaatattagccctatttataatacacaagat 40274455  T
Q  109 gaataagtgagtgatcaagataattaaggtccactaacta-ttcactcattaatgggggttataggaaagtgaaa 182  Q
    || ||||||||||||||||  |||||| |||||||||||| |||||| | ||||||| |||||| ||| ||||||    
T  40274456 gagtaagtgagtgatcaaggcaattaaagtccactaactatttcacttactaatgggagttataagaaggtgaaa 40274530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 40279148 - 40279311
Alignment:
Q  12 aaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaa 111  Q
    ||||||||| ||| ||||||||||| |||||| ||||||||||||||||| |||||||||  ||| ||||||||  ||||||||||| |||||||||||     
T  40279148 aaagaagagaaaggagaagatgaaaacactttatattattctcttcacaaatgtgtctttgcaatacaatatgaaccctatttatagtacacaagatgag 40279247  T
Q  112 taagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 175  Q
    ||||||||||||||||  ||||||||||||||||||||||||| | ||||||| ||||||||||    
T  40279248 taagtgagtgatcaaggcaattaaggtccactaactattcacttactaatgggagttataggaa 40279311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 29530292 - 29530120
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattct-cttcacaagtgtg-tctttagaattcaatatgagtcctatttataggacacaagatga 110  Q
    ||||||||||||||| |||||||| ||||||||||||||||  ||  |||||||| |||||| | | ||||||  |||||||||||| ||||||| ||||    
T  29530292 aagaagaggaagaaggagatgaaaacactttgtattattctatttttcaagtgtgttctttacattacaatataggtcctatttatatgacacaa-atga 29530194  T
Q  111 ataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaaga 184  Q
      |||||| |||||||   |||||||| |||||||| || || | | | |||||| ||| ||||||||| ||||    
T  29530193 gcaagtgaatgatcaaaccaattaaggaccactaaccatgcatttactgatggggtttacaggaaagtggaaga 29530120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 29547940 - 29547775
Alignment:
Q  20 ggaagaagaagatgaaagcactttgtattattctc-ttcacaagtgtg-tctttagaattcaatatgagtcctatttataggacacaagatgaataagtg 117  Q
    |||||||||||||||||  | |||||||||||||| ||  |||||||| |||||| | | ||||||  ||||||||||||||||| || ||||  |||||    
T  29547940 ggaagaagaagatgaaaatattttgtattattctctttttcaagtgtgttctttacattacaatataggtcctatttataggacataa-atgagcaagtg 29547842  T
Q  118 agtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaaga 184  Q
    | |||||||   |||||||| |||||||| || || | | |||||||| ||||||||| ||| ||||    
T  29547841 aatgatcaaacaaattaaggaccactaaccatgcatttactaatggggattataggaaggtggaaga 29547775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 28201654 - 28201817
Alignment:
Q  41 tttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtcc 140  Q
    |||||| ||||||||| |||||||||   ||| | |  |||||||||| ||||||||||||| || ||||| |||||| | |||||   |||||| | |     
T  28201654 tttgtactattctctttacaagtgtgctattacattaaaatatgagtcatatttataggacataa-atgaacaagtgaattatcaaagcaattaaagact 28201752  T
Q  141 actaactattcactcattaatgg-gggttataggaaagtgaaagactaaggatggaaatccacta 204  Q
    |||||| || || ||| |||||| |||||||||||| ||| ||||  ||||||||| ||||||||    
T  28201753 actaaccatacattcactaatggagggttataggaaggtggaagataaaggatggacatccacta 28201817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 27417427 - 27417509
Alignment:
Q  54 cttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaag 136  Q
    |||| |||||||||||||| | |  |||| |||||||||||||| || |||| |||| ||||||| |||||||  ||||||||    
T  27417427 cttctcaagtgtgtctttacattataatacgagtcctatttataagatacaatatgagtaagtgaatgatcaaattaattaag 27417509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 16633255 - 16633446
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 112  Q
    ||||||| ||||| || ||||||| |  ||| |||||||||||||||||| ||||||||  ||| ||||||||| ||||||||||||||||||| ||| |    
T  16633255 aagaagaagaagatgatgatgaaaaccttttatattattctcttcacaagcgtgtctttgcaatacaatatgagccctatttataggacacaagttgagt 16633354  T
Q  113 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 205  Q
    |||||| |||||||  |||||||||||||||||||||||||||  |||| ||||||||||||| ||| ||||||||||||||| |||||||||    
T  16633355 aagtgaatgatcaaagtaattaaggtccactaactattcactcgctaat-ggggttataggaaggtggaagactaaggatggacatccactaa 16633446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 19779954 - 19780116
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 112  Q
    |||||||||||  ||||||| |||||||||||||||||||||||||  |||||||||||  ||| ||||||||| ||||||||||| |||||||| || |    
T  19779954 aagaagaggaatgagaagataaaagcactttgtattattctcttcaagagtgtgtctttgtaatacaatatgagccctatttatagtacacaagacgagt 19780053  T
Q  113 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 175  Q
    ||||||||||||||| |||||||||||||||||||||||||| | ||||| | ||||||||||    
T  19780054 aagtgagtgatcaaggtaattaaggtccactaactattcacttactaatgagagttataggaa 19780116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 19479453 - 19479607
Alignment:
Q  21 gaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagt 120  Q
    ||||||||||||||||| |||||||||||||||||| | ||||||||||||| ||| |||||| || ||||||||||| ||||||||||| |||| ||||    
T  19479453 gaagaagaagatgaaagaactttgtattattctctttataagtgtgtctttacaatacaatataagccctatttatagtacacaagatgagtaagcgagt 19479552  T
Q  121 gatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 175  Q
    |||||||  ||||||||||||||||||||||||| | ||||| | ||||||||||    
T  19479553 gatcaaggcaattaaggtccactaactattcacttactaatgagagttataggaa 19479607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 19783201 - 19783363
Alignment:
Q  12 aaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaa 111  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||||  ||||||||||| | || |||||||||  |||||||||| |||||||||||     
T  19783201 aaagaagagaaaggagaagataaaagcactttgtattattctcttcaagagtgtgtcttt-gcatacaatatgagcactatttatagtacacaagatgag 19783299  T
Q  112 taagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 175  Q
    |||||||||||| ||   ||||||| ||||||||||||||||| | ||||| | ||||||||||    
T  19783300 taagtgagtgatgaaagcaattaagttccactaactattcacttactaatgagagttataggaa 19783363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 17604821 - 17604690
Alignment:
Q  78 caatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaac----tattcactcattaatgggggttatagg 173  Q
    |||||||||||||||||||| || |||| |||||||  ||||||||||| |||||||||||||||||||    |||||||||| ||||||||||||||||    
T  17604821 caatatgagtcctatttataagatacaaaatgaatagctgagtgatcaaaataattaaggtccactaactatatattcactcactaatgggggttatagg 17604722  T
Q  174 aaagtgaaagactaaggatggaaatccactaa 205  Q
    || ||| ||||||||||||||| |||||||||    
T  17604721 aaggtggaagactaaggatggacatccactaa 17604690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 17604886 - 17604824
Alignment:
Q  41 tttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacac 103  Q
    ||||||||||||||||||||||||||  |||| | | ||||||||| ||||||||||||||||    
T  17604886 tttgtattattctcttcacaagtgtgcatttacactacaatatgagccctatttataggacac 17604824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 21575046 - 21575089
Alignment:
Q  162 gggggttataggaaagtgaaagactaaggatggaaatccactaa 205  Q
    |||||||||||||| ||| ||||||||||||||| |||||||||    
T  21575046 gggggttataggaaggtggaagactaaggatggacatccactaa 21575089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 35105122 - 35105030
Alignment:
Q  113 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 205  Q
    |||||| |||||||  |||||||||  ||||||| || || ||| | ||||| ||||| | || ||| ||||||||||||||| |||||||||    
T  35105122 aagtgaatgatcaaagtaattaaggatcactaaccatccattcacttatgggagttattgcaaggtgtaagactaaggatggacatccactaa 35105030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 8832533 - 8832646
Alignment:
Q  14 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 113  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||  | |||||||||  ||| ||||||||  ||||||||||| ||||||||||| ||    
T  8832533 agaagaggaaggagaggatgaaatcactttgtattattctcttcaagactgtgtctttgcaatacaatatgaaccctatttatagtacacaagatgagta 8832632  T
Q  114 agtgagtgatcaag 127  Q
    ||||||||||||||    
T  8832633 agtgagtgatcaag 8832646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 39875946 - 39875817
Alignment:
Q  8 aatcaaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaaga 107  Q
    |||| ||||| |||| |||||||||||||| | ||||||||  |||||||||||||||||||||  ||| ||||| |||   ||||||||| ||||||||    
T  39875946 aatctaagaaaaggaggaagaagatgaaagtaatttgtatt--tctcttcacaagtgtgtctttgcaatacaataggagctttatttatagtacacaaga 39875849  T
Q  108 tgaataagtgagtgatcaagataattaaggtc 139  Q
    ||| ||||||||||||||||  ||||||||||    
T  39875848 tgagtaagtgagtgatcaaggcaattaaggtc 39875817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 44126710 - 44126823
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtc-tttagaattcaatatgagtcctatttataggacacaagatgaa 111  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || | | | ||||||  |||||||||||||||||||| ||||     
T  44126710 aagaagagaaagaagaagatgaaagtactttgtattattctcttcacaagtgtgtcattcacattacaatataggtcctatttataggacacaa-atgag 44126808  T
Q  112 taagtgagtgatcaa 126  Q
     |||||| |||||||    
T  44126809 caagtgaatgatcaa 44126823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 21587185 - 21587306
Alignment:
Q  83 tgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaa 182  Q
    ||||||||||||||||||||||| ||||  |||||| |||||||   | ||||||  ||||||| || |  ||| |||||||||||||||||| ||| ||    
T  21587185 tgagtcctatttataggacacaa-atgagcaagtgaatgatcaaagcagttaaggatcactaaccatactttcactaatgggggttataggaaggtggaa 21587283  T
Q  183 gactaaggatggaaatccactaa 205  Q
    || ||||| |||| | |||||||    
T  21587284 gattaagggtggacacccactaa 21587306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 13921758 - 13921708
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgt 65  Q
    |||||||||||||||| |||||||||  ||||| |||||||||||||||||||    
T  13921758 aagaagaggaagaagatgatgaaagc--tttgtgttattctcttcacaagtgt 13921708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 20458819 - 20458933
Alignment:
Q  89 ctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaa 188  Q
    ||||||||||| ||||| ||||  |||||| ||||||| | | ||||||| ||||||| |  || ||| |||||||| ||||||||| ||| |||| |||    
T  20458819 ctatttataggtcacaa-atgagcaagtgaatgatcaaaacatttaaggttcactaaccaaacattcactaatgggg-ttataggaaggtggaagattaa 20458916  T
Q  189 ggatggaaatccactaa 205  Q
    ||||||| |||||||||    
T  20458917 ggatggacatccactaa 20458933  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 20463226 - 20463299
Alignment:
Q  132 ttaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 205  Q
    ||||||||||||||| || || ||| |||| ||| ||||||||| | | ||||||||| ||||| |||||||||    
T  20463226 ttaaggtccactaaccatacattcactaatagggattataggaaggaggaagactaagaatggacatccactaa 20463299  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 7873835 - 7873918
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttata 97  Q
    ||||||| ||||| || ||||||||| ||||||||||||||||| |||| ||||| |||| | |  || ||||||| ||||||||    
T  7873835 aagaagaagaagacgatgatgaaagc-ctttgtattattctctttacaaatgtgtttttacattaaaacatgagtcttatttata 7873918  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 19912443 - 19912279
Alignment:
Q  41 tttgtattattctcttcacaagtgtgtctttagaattc-aatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtc 139  Q
    ||||||||||||||||||||||||| | |||   |||  |||||  |||||||||||||||||||| ||||  ||||||||||||||   |||||||| |    
T  19912443 tttgtattattctcttcacaagtgtatattttacattataatataggtcctatttataggacacaa-atgagcaagtgagtgatcaaagcaattaaggac 19912345  T
Q  140 cactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 205  Q
     |||||| || || ||| |||| ||||||||||||| ||| |||| ||||| |||| |||||||||    
T  19912344 tactaaccatacattcaataataggggttataggaaggtggaagattaagggtggacatccactaa 19912279  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 34111054 - 34111131
Alignment:
Q  128 ataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 205  Q
    ||||||||||||||||||||||||||||| ||||| | |||||||||| ||| | || |||||||||| |||||||||    
T  34111054 ataattaaggtccactaactattcactcactaatgcgagttataggaaggtggatgattaaggatggacatccactaa 34111131  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 201
Target Start/End: Complemental strand, 45276475 - 45276354
Alignment:
Q  79 aatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagt 178  Q
    ||||||||||||||||||||||||||| |||| ||||||| || |||| |  ||||||| |||||||| || || ||| |||   |||||||||||| ||    
T  45276475 aatatgagtcctatttataggacacaa-atgagtaagtgaatggtcaaaactattaaggaccactaaccatacattcactaacatgggttataggaaggt 45276377  T
Q  179 gaaagactaaggatggaaatcca 201  Q
    | ||||  | ||||||| |||||    
T  45276376 ggaagatgagggatggacatcca 45276354  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 17909983 - 17909890
Alignment:
Q  12 aaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtg-tctttagaattcaatatgagtcctatttataggacaca 104  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||| |||||||| |||||| | |   |||| ||||||||||||||||||||    
T  17909983 aaagatgaggaaggagaagatgaaagtactttgtattattctcttctcaagtgtgttctttacattgagatataagtcctatttataggacaca 17909890  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 10739196 - 10739137
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtcttta 72  Q
    |||||||| | | |||||||||||||||||||||||||||||||||||||| | ||||||    
T  10739196 aagaagagaatggagaagatgaaagcactttgtattattctcttcacaagtatatcttta 10739137  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 15007236 - 15007178
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtcttta 72  Q
    |||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||    
T  15007236 aagatgaggaaggagaagatgaaagcactttgtatta-tctcttcaccagtgtgtcttta 15007178  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 36911928 - 36911983
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtc 68  Q
    |||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||    
T  36911928 aagaagaggaagaagaaggtgaaaacactttttattattctcttcagaagtgtgtc 36911983  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 10734149 - 10734068
Alignment:
Q  24 gaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaa 105  Q
    ||||||||||||| |||||||||||||||||||||||||| | |||||| |   |||| |  ||||||||||||||| ||||    
T  10734149 gaagaagatgaaaacactttgtattattctcttcacaagtatatctttacatgacaatgtaggtcctatttataggatacaa 10734068  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 12145639 - 12145764
Alignment:
Q  28 aagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtccta-tttataggacacaagatgaataagtgagtgatcaa 126  Q
    |||||||||||  | |||||||| ||||||| |||||||| |||| | |   | ||||||| || |||||||||||||| ||||  ||||||||||||||    
T  12145639 aagatgaaagctttgtgtattatcctcttcagaagtgtgtttttacactaacaaatgagtcttattttataggacacaaaatgagcaagtgagtgatcaa 12145738  T
Q  127 gataattaaggtccactaactattca 152  Q
      ||||||||  ||||||||||||||    
T  12145739 agtaattaagaaccactaactattca 12145764  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 23599934 - 23599986
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgt 65  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  23599934 aagaagatgaagaagaagatgaaagcattttgtattattctcttcataagtgt 23599986  T

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Target: scaffold0248 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 16312 - 16258
Alignment:
Q  13 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgt 67  Q
    |||||||||||||| || || |||||||||||||||||| |||||||| ||||||    
T  16312 aagaagaggaagaaaaatataaaagcactttgtattattttcttcacaggtgtgt 16258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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