View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_51 (Length: 421)
Name: NF10145A_low_51
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 26943761 - 26943388
Alignment:
| Q |
20 |
catcaagttagttttacttcgttctgtttcatgactgatccttctattacttgctttctgcacatctggaaaactaaactcaagaccagtggtaactctt |
119 |
Q |
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| T |
26943761 |
catcaagttagttttacttcgttctgtttcatgactgatccttctattacttgctttctgcacatctggaaaactaaactcaagaccagtggtaactctt |
26943662 |
T |
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| Q |
120 |
acttcaggtcatggtccaaaccttttgcatgtgcacagtatggggtgaacctctctcgcaaactgctcaatcatttatgcccgaattgttatatggagtt |
219 |
Q |
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| T |
26943661 |
acttcaggtcatggtccaaaccttttgcatgtgcacagtatggggtgaacctctctcgcaaactgctcaatcatttatgcctgaattgttatatggagtt |
26943562 |
T |
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| Q |
220 |
aatcaaaatttgtcaaaggttggtgtttctcatttgcaatgttaccactctgatgtcccaagacctcttgcatatcctcatatctctagcttctgatctt |
319 |
Q |
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| T |
26943561 |
aatcggaatttgtcaaaggttggtgtttctcatttgcaatgttaccactctgatgtcctaagacctcttgcatatcctcatatctctagcttctgatctt |
26943462 |
T |
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| Q |
320 |
tcttgtgcctagttgacgatcatattaaggatcactgttttcattaattgggatatgtagtttcatacagtgat |
393 |
Q |
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| T |
26943461 |
tcttgtgcctagttgacgatcatattaaggatcactgttttcattaattgggatatgtagtttcatacagtgat |
26943388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 253
Target Start/End: Original strand, 26979200 - 26979304
Alignment:
| Q |
149 |
tgtgcacagtatggggtgaacctctctcgcaaactgctcaatcatttatgcccgaattgttatatggagttaatcaaaatttgtcaaaggttggtgtttc |
248 |
Q |
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| T |
26979200 |
tgtgcacagtatgtggtgaacctatctcccaaactgctcaatcatttatgcctgagttgatgtacggagtaaatcggagtttggtaaaggttggtgttac |
26979299 |
T |
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| Q |
249 |
tcatt |
253 |
Q |
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||||| |
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| T |
26979300 |
tcatt |
26979304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 27003036 - 27002964
Alignment:
| Q |
151 |
tgcacagtatggggtgaacctctctcgcaaactgctcaatcatttatgcccgaattgttatatggagttaatc |
223 |
Q |
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|||||| |||| |||||||||||||| ||||||||||||||||||||||| || ||| | |||||||| |||| |
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| T |
27003036 |
tgcacaatatgtggtgaacctctctcccaaactgctcaatcatttatgcctgagttgatgtatggagtaaatc |
27002964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 253
Target Start/End: Complemental strand, 26988253 - 26988158
Alignment:
| Q |
158 |
tatggggtgaacctctctcgcaaactgctcaatcatttatgcccgaattgttatatggagttaatcaaaatttgtcaaaggttggtgtttctcatt |
253 |
Q |
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|||| |||||||||||||| ||||| ||||||||||||||||| || ||| | |||||||| |||| | |||| |||||||| ||| | |||||| |
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| T |
26988253 |
tatgtggtgaacctctctcccaaaccgctcaatcatttatgcctgagttgatgtatggagtaaatcggagtttggcaaaggttagtggtactcatt |
26988158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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