View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_516 (Length: 241)
Name: NF10145A_low_516
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_516 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 6236342 - 6236580
Alignment:
| Q |
2 |
atatcatggtgtttctaaattatagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattg |
101 |
Q |
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| T |
6236342 |
atatcatggtgtttctaaattttagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattg |
6236441 |
T |
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| Q |
102 |
aaaacctaggtgataggtgaaaatctaannnnnnnnnnnnngatcaagcgaagaaattcaataaaactagagagggccagaacccataacaaggtctaca |
201 |
Q |
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| T |
6236442 |
aaaacctaggtgataggtgaaaatctaattttttttttttt-atcaagcgaagaaattcaataaaactgaagagggccagaacccataacaaagtctaca |
6236540 |
T |
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| Q |
202 |
tcaggaagaaacaaaaacagaaaaggcagaattacatcaa |
241 |
Q |
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| T |
6236541 |
tcaggaagaaacaaaaatagaaaaggcagaattacatcaa |
6236580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 33891908 - 33891807
Alignment:
| Q |
24 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
123 |
Q |
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| T |
33891908 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33891813 |
T |
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| Q |
124 |
atctaa |
129 |
Q |
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| T |
33891812 |
atctaa |
33891807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 33952340 - 33952441
Alignment:
| Q |
24 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
123 |
Q |
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|||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |||||||||||||| | || ||||||| |
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| T |
33952340 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33952435 |
T |
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| Q |
124 |
atctaa |
129 |
Q |
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|||||| |
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| T |
33952436 |
atctaa |
33952441 |
T |
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