View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_517 (Length: 241)
Name: NF10145A_low_517
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_517 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 25258290 - 25258053
Alignment:
| Q |
4 |
gacatcaatgataatttgagaaaatgtaacaacatacattggtatcgtgcatgttagtgttggatactgacacatgtttgaacactgaacacgttttcaa |
103 |
Q |
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| T |
25258290 |
gacatcaacgataatttgagaaaatgtaacaacatacattggtatcgtgcgtgttagtgttggatactgacacatgtttgaacactaaacacgttttcaa |
25258191 |
T |
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| Q |
104 |
tctgaagtacccgtgttgcatagcttttaagcaactattcttattaatattggattacatgtttttagaaactactttactatacagtcattgaggctgg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25258190 |
tctgaagtacccgtgttgcatagcttttaagcaactattcttattaatattggattacatgtttttagaaactactttactatatagtcattgaggctgg |
25258091 |
T |
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| Q |
204 |
cttagtggaaccatgcttcgtttgcaagtgagaataat |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
25258090 |
cttagtggaaccatgcttcgtttgcaagtgagaataat |
25258053 |
T |
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