View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_518 (Length: 241)

Name: NF10145A_low_518
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_518
NF10145A_low_518
[»] chr2 (18 HSPs)
chr2 (11-233)||(7886032-7886263)
chr2 (67-108)||(26655791-26655832)
chr2 (66-106)||(13594090-13594130)
chr2 (69-106)||(9169952-9169989)
chr2 (69-106)||(41014480-41014517)
chr2 (67-97)||(27590999-27591029)
chr2 (69-106)||(8875294-8875331)
chr2 (69-106)||(13450355-13450392)
chr2 (69-106)||(15265774-15265811)
chr2 (66-107)||(20579286-20579327)
chr2 (69-102)||(21839807-21839840)
chr2 (69-106)||(41633381-41633418)
chr2 (69-102)||(42057168-42057201)
chr2 (69-106)||(42060234-42060271)
chr2 (69-106)||(44019873-44019910)
chr2 (62-106)||(7157340-7157384)
chr2 (62-106)||(25915050-25915094)
chr2 (70-106)||(35916910-35916946)
[»] chr4 (14 HSPs)
chr4 (61-108)||(25736984-25737031)
chr4 (69-106)||(17702667-17702704)
chr4 (69-106)||(20702726-20702763)
chr4 (69-108)||(38364686-38364725)
chr4 (62-108)||(12214395-12214441)
chr4 (69-99)||(35103915-35103945)
chr4 (69-106)||(669836-669873)
chr4 (69-106)||(5190634-5190671)
chr4 (69-106)||(15849755-15849792)
chr4 (69-106)||(17702398-17702435)
chr4 (69-106)||(31139137-31139174)
chr4 (69-106)||(35447501-35447538)
chr4 (69-106)||(37143620-37143657)
chr4 (70-106)||(10128624-10128660)
[»] scaffold0330 (1 HSPs)
scaffold0330 (69-106)||(18686-18723)
[»] scaffold0240 (1 HSPs)
scaffold0240 (69-106)||(2704-2741)
[»] chr3 (22 HSPs)
chr3 (69-106)||(19245532-19245569)
chr3 (69-106)||(7639662-7639699)
chr3 (69-106)||(13043145-13043182)
chr3 (69-106)||(13051222-13051259)
chr3 (69-106)||(42896641-42896678)
chr3 (67-106)||(18388613-18388652)
chr3 (61-99)||(8149380-8149418)
chr3 (69-107)||(26130980-26131018)
chr3 (69-106)||(265166-265203)
chr3 (69-106)||(5907149-5907186)
chr3 (69-106)||(10438471-10438508)
chr3 (69-106)||(18540386-18540423)
chr3 (69-106)||(20296085-20296122)
chr3 (69-106)||(21790322-21790359)
chr3 (69-106)||(22177569-22177606)
chr3 (69-106)||(25012453-25012490)
chr3 (69-106)||(25478959-25478996)
chr3 (61-102)||(39903759-39903800)
chr3 (69-102)||(50099214-50099247)
chr3 (72-108)||(8757304-8757340)
chr3 (61-97)||(30805733-30805769)
chr3 (78-106)||(35379576-35379604)
[»] scaffold0092 (1 HSPs)
scaffold0092 (66-106)||(24098-24138)
[»] scaffold0024 (1 HSPs)
scaffold0024 (69-108)||(44456-44495)
[»] chr1 (25 HSPs)
chr1 (61-108)||(23655227-23655274)
chr1 (69-106)||(9822460-9822497)
chr1 (69-106)||(19275142-19275179)
chr1 (69-106)||(33194096-33194133)
chr1 (69-106)||(33933963-33934000)
chr1 (69-109)||(20906970-20907010)
chr1 (67-106)||(1581032-1581071)
chr1 (69-120)||(4968833-4968884)
chr1 (69-108)||(9441288-9441327)
chr1 (61-106)||(9479731-9479776)
chr1 (69-106)||(10729255-10729292)
chr1 (69-106)||(11345141-11345178)
chr1 (69-106)||(11842805-11842842)
chr1 (73-106)||(15470673-15470706)
chr1 (73-106)||(27307629-27307662)
chr1 (69-106)||(34011046-34011083)
chr1 (69-106)||(37705665-37705702)
chr1 (69-106)||(44667969-44668006)
chr1 (69-102)||(48420175-48420208)
chr1 (69-106)||(49162923-49162960)
chr1 (67-108)||(52043580-52043621)
chr1 (70-106)||(34749026-34749062)
chr1 (74-102)||(34969177-34969205)
chr1 (69-105)||(36421275-36421311)
chr1 (70-106)||(44648438-44648474)
[»] scaffold0649 (1 HSPs)
scaffold0649 (69-106)||(8260-8297)
[»] chr8 (12 HSPs)
chr8 (69-106)||(5918840-5918877)
chr8 (69-106)||(24688826-24688863)
chr8 (69-106)||(38804489-38804526)
chr8 (67-102)||(11938015-11938050)
chr8 (67-106)||(28205635-28205674)
chr8 (70-104)||(1759476-1759510)
chr8 (69-99)||(33192371-33192401)
chr8 (69-106)||(3825401-3825438)
chr8 (69-106)||(13150149-13150186)
chr8 (69-106)||(15916928-15916965)
chr8 (67-99)||(15837335-15837367)
chr8 (62-106)||(34968163-34968207)
[»] chr7 (16 HSPs)
chr7 (69-106)||(15646963-15647000)
chr7 (69-106)||(21766032-21766069)
chr7 (69-106)||(39435174-39435211)
chr7 (66-107)||(47741591-47741632)
chr7 (69-106)||(47901935-47901972)
chr7 (69-108)||(1303245-1303284)
chr7 (72-106)||(46759435-46759469)
chr7 (69-106)||(581603-581640)
chr7 (69-106)||(2474886-2474923)
chr7 (69-106)||(5800451-5800488)
chr7 (69-106)||(10199483-10199520)
chr7 (69-106)||(19371930-19371967)
chr7 (69-106)||(20691970-20692007)
chr7 (69-106)||(20697448-20697485)
chr7 (69-102)||(25617449-25617482)
chr7 (62-106)||(41383769-41383813)
[»] chr6 (9 HSPs)
chr6 (69-106)||(32531320-32531357)
chr6 (67-106)||(8233397-8233436)
chr6 (69-120)||(17353310-17353360)
chr6 (69-108)||(24062813-24062852)
chr6 (70-100)||(6874963-6874993)
chr6 (69-103)||(10460312-10460346)
chr6 (72-109)||(1212059-1212096)
chr6 (69-106)||(34209889-34209926)
chr6 (69-105)||(22535310-22535346)
[»] chr5 (16 HSPs)
chr5 (69-106)||(936327-936364)
chr5 (69-106)||(9524095-9524132)
chr5 (69-106)||(12083208-12083245)
chr5 (69-106)||(24836953-24836990)
chr5 (67-106)||(36700951-36700990)
chr5 (64-102)||(35272226-35272264)
chr5 (69-106)||(834030-834067)
chr5 (69-106)||(6062199-6062236)
chr5 (69-106)||(14000671-14000708)
chr5 (69-102)||(16313455-16313488)
chr5 (69-106)||(28867415-28867452)
chr5 (69-106)||(39956013-39956050)
chr5 (70-106)||(3295810-3295846)
chr5 (69-101)||(20176321-20176353)
chr5 (62-106)||(23270849-23270893)
chr5 (78-106)||(39191236-39191264)
[»] scaffold0268 (1 HSPs)
scaffold0268 (69-106)||(21411-21448)
[»] scaffold0229 (1 HSPs)
scaffold0229 (72-109)||(13221-13258)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 7886263 - 7886032
Alignment:
Q  11 aagtatttctctaaacgctaatgggtatatgtatatatttcatnnnnnnntaccgattataatttttaaacgttagcgcaataaaaagagcggaaaaaag 110  Q
    ||||||| ||||||||||||||| |||||||||||||||||||       ||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  7886263 aagtattactctaaacgctaatgtgtatatgtatatatttcataaaaaaataccatttataatttttaaacgttagcgcaataaaaagagcggaaaaaag 7886164  T
Q  111 tgtctgtctt---------atatattatgtcatatgtgaatttttggctgtgccacttgacattgttttgccgcaaaacttttgctgcaacaatatccaa 201  Q
    ||||||||||         ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7886163 tgtctgtcttttcgctagtatatattatatcatatgtgaatttttggctgtgccacttgacattgttttgccgcaaaactattgctgcaacaatatccaa 7886064  T
Q  202 caacactctgaaagtattgagcttgaacacca 233  Q
    ||||||||||||||||||||||||||||||||    
T  7886063 caacactctgaaagtattgagcttgaacacca 7886032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 26655832 - 26655791
Alignment:
Q  67 ttataatttttaaacgttagcgcaataaaaagagcggaaaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26655832 ttataatttttaaacgttagcgcaataaaaagagcggaaaaa 26655791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 13594130 - 13594090
Alignment:
Q  66 attataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  13594130 attataattttcaaacgttagcgcaataaaaagagcggaaa 13594090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 9169952 - 9169989
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||||||||||||||||||||||| |||||    
T  9169952 ataatttttaaacgttagcgcaataaaaagagtggaaa 9169989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 41014480 - 41014517
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||||||||||    
T  41014480 ataattttcaaacgttagcgcaataaaaagagcggaaa 41014517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 97
Target Start/End: Original strand, 27590999 - 27591029
Alignment:
Q  67 ttataatttttaaacgttagcgcaataaaaa 97  Q
    |||||||||||||||||||||||||||||||    
T  27590999 ttataatttttaaacgttagcgcaataaaaa 27591029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 8875331 - 8875294
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  8875331 ataattttcaaatgttagcgcaataaaaagagcggaaa 8875294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 13450355 - 13450392
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  13450355 ataattttcaaacattagcgcaataaaaagagcggaaa 13450392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 15265774 - 15265811
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  15265774 ataattttcaaacgttagcgtaataaaaagagcggaaa 15265811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 20579327 - 20579286
Alignment:
Q  66 attataatttttaaacgttagcgcaataaaaagagcggaaaa 107  Q
    |||| |||||| ||||||||||||||||||||||||| ||||    
T  20579327 attaaaattttcaaacgttagcgcaataaaaagagcgaaaaa 20579286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 21839807 - 21839840
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcg 102  Q
    |||||||| |||||||||||||||||||||||||    
T  21839807 ataattttcaaacgttagcgcaataaaaagagcg 21839840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 41633381 - 41633418
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  41633381 ataattttcaaacgttagcgcaataaaaagtgcggaaa 41633418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 42057201 - 42057168
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcg 102  Q
    |||||||| |||||||||||||||||||||||||    
T  42057201 ataattttcaaacgttagcgcaataaaaagagcg 42057168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 42060271 - 42060234
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  42060271 ataattttgaaacgttagcgcaataaaaagatcggaaa 42060234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 44019910 - 44019873
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  44019910 ataattttcaaacgttggcgcaataaaaagagcggaaa 44019873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 7157384 - 7157340
Alignment:
Q  62 accgattataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||| |||||||| |||||||||||||||||||| | ||||||    
T  7157384 accgataataattttcaaacgttagcgcaataaaaaaaacggaaa 7157340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 25915094 - 25915050
Alignment:
Q  62 accgattataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||| |||||||||| ||||||||||||||||| |||||| ||||    
T  25915094 accgtttataattttcaaacgttagcgcaataataagagcagaaa 25915050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 35916910 - 35916946
Alignment:
Q  70 taatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  35916910 taattttcaaacgttaacgcaataaaaagagcggaaa 35916946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 25737031 - 25736984
Alignment:
Q  61 taccgattataatttttaaacgttagcgcaataaaaagagcggaaaaa 108  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  25737031 taccgtttataatttttaaactttagcgcaataaaaagagcggaaaaa 25736984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 17702667 - 17702704
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||||||||||    
T  17702667 ataattttcaaacgttagcgcaataaaaagagcggaaa 17702704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 20702726 - 20702763
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||||||||||    
T  20702726 ataattttcaaacgttagcgcaataaaaagagcggaaa 20702763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 38364725 - 38364686
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaaaa 108  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  38364725 ataatttttaaacattagcacaataaaaagagcggaaaaa 38364686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 12214441 - 12214395
Alignment:
Q  62 accgattataatttttaaacgttagcgcaataaaaagagcggaaaaa 108  Q
    |||| |||||||||| ||||||||| |||||||||||| ||||||||    
T  12214441 accgtttataattttcaaacgttagtgcaataaaaagatcggaaaaa 12214395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 99
Target Start/End: Complemental strand, 35103945 - 35103915
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaaga 99  Q
    |||||||||||||||||||||||||||||||    
T  35103945 ataatttttaaacgttagcgcaataaaaaga 35103915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 669836 - 669873
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  669836 ataattttcaaacgttagtgcaataaaaagagcggaaa 669873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 5190634 - 5190671
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  5190634 ataattttcaaatgttagcgcaataaaaagagcggaaa 5190671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 15849755 - 15849792
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  15849755 ataattttcaaacgttagcccaataaaaagagcggaaa 15849792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 17702435 - 17702398
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  17702435 ataattttcaaacgttagcgcagtaaaaagagcggaaa 17702398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 31139137 - 31139174
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  31139137 ataatttttaaactttagtgcaataaaaagagcggaaa 31139174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 35447538 - 35447501
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  35447538 ataatttttaaaccttagcacaataaaaagagcggaaa 35447501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 37143657 - 37143620
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  37143657 ataattttcaaacgttagcgcaataaaaaaagcggaaa 37143620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 10128624 - 10128660
Alignment:
Q  70 taatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||  ||||||||||||||||||||||||||||    
T  10128624 taattttcgaacgttagcgcaataaaaagagcggaaa 10128660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 18686 - 18723
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18686 ataatttttaaacgttagcgcaataaaaagagcggaaa 18723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 2704 - 2741
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2704 ataatttttaaacgttagcgcaataaaaagagcggaaa 2741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 19245532 - 19245569
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19245532 ataatttttaaacgttagcgcaataaaaagagcggaaa 19245569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 7639662 - 7639699
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||||||||||    
T  7639662 ataattttcaaacgttagcgcaataaaaagagcggaaa 7639699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 13043182 - 13043145
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||||||||||    
T  13043182 ataattttcaaacgttagcgcaataaaaagagcggaaa 13043145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 13051259 - 13051222
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||||||||||    
T  13051259 ataattttcaaacgttagcgcaataaaaagagcggaaa 13051222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 42896678 - 42896641
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||||||||||    
T  42896678 ataattttgaaacgttagcgcaataaaaagagcggaaa 42896641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 18388652 - 18388613
Alignment:
Q  67 ttataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  18388652 ttataattttcaaacgttagggcaataaaaagagcggaaa 18388613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 8149418 - 8149380
Alignment:
Q  61 taccgattataatttttaaacgttagcgcaataaaaaga 99  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  8149418 taccgtttataatttttaaacgttagtgcaataaaaaga 8149380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 26130980 - 26131018
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaaa 107  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  26130980 ataattatcaaacgttagcgcaataaaaagagcggaaaa 26131018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 265166 - 265203
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  265166 ataactttcaaacgttagcgcaataaaaagagcggaaa 265203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 5907186 - 5907149
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  5907186 ataattttgaaacgttagcgtaataaaaagagcggaaa 5907149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 10438471 - 10438508
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  10438471 ataatttttaaactttagtgcaataaaaagagcggaaa 10438508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 18540423 - 18540386
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  18540423 ataatttttaaatgttagcgcaataaaaagagcagaaa 18540386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 20296085 - 20296122
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  20296085 ataatttttaaacgttagcggaataaaaatagcggaaa 20296122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 21790359 - 21790322
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  21790359 ataattttcaaacgttagtgcaataaaaagagcggaaa 21790322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 22177569 - 22177606
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  22177569 ataattttcaaacgttaacgcaataaaaagagcggaaa 22177606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 25012490 - 25012453
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  25012490 ataatttttaaacgttagcgcagtaaaaaaagcggaaa 25012453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 25478996 - 25478959
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  25478996 ataattttcaaacgtcagcgcaataaaaagagcggaaa 25478959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 39903800 - 39903759
Alignment:
Q  61 taccgattataatttttaaacgttagcgcaataaaaagagcg 102  Q
    ||||| |||||||||| ||||||||| |||||||||||||||    
T  39903800 taccgtttataattttcaaacgttagtgcaataaaaagagcg 39903759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 50099214 - 50099247
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcg 102  Q
    |||||||||||||||||| |||||||||||||||    
T  50099214 ataatttttaaacgttagtgcaataaaaagagcg 50099247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 8757340 - 8757304
Alignment:
Q  72 atttttaaacgttagcgcaataaaaagagcggaaaaa 108  Q
    |||||||||| |||| |||||||||||||||||||||    
T  8757340 atttttaaactttagtgcaataaaaagagcggaaaaa 8757304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 30805769 - 30805733
Alignment:
Q  61 taccgattataatttttaaacgttagcgcaataaaaa 97  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  30805769 taccgtttataattttcaaacgttagcgcaataaaaa 30805733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 106
Target Start/End: Original strand, 35379576 - 35379604
Alignment:
Q  78 aaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||||||||||||||||||||    
T  35379576 aaacgttagcgcaataaaaagagcggaaa 35379604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 24098 - 24138
Alignment:
Q  66 attataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  24098 attataatttttaaacgttagcgcaataaaaagaacggaaa 24138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 108
Target Start/End: Original strand, 44456 - 44495
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaaaa 108  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  44456 ataatttttaaacgttagcgcaataaaaagagcagaaaaa 44495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 23655274 - 23655227
Alignment:
Q  61 taccgattataatttttaaacgttagcgcaataaaaagagcggaaaaa 108  Q
    ||||| ||||||||||||||||||| |||||| |||||||||||||||    
T  23655274 taccgtttataatttttaaacgttaacgcaattaaaagagcggaaaaa 23655227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 9822460 - 9822497
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||||||||||||||||||| |||||||||    
T  9822460 ataatttttaaacgttagcgcaataaaatgagcggaaa 9822497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 19275142 - 19275179
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  19275142 ataatttttaaacgttagcgcaataaaaagaacggaaa 19275179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 33194096 - 33194133
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  33194096 ataatttttaaacgttaacgcaataaaaagagcggaaa 33194133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 33934000 - 33933963
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||| |||||||||||||||||||||||||    
T  33934000 ataatttttaaatgttagcgcaataaaaagagcggaaa 33933963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 20906970 - 20907010
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaaaaa 109  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  20906970 ataattttcaaacgttagcgcaataaaaagagcagaaaaaa 20907010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 1581071 - 1581032
Alignment:
Q  67 ttataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  1581071 ttataattttcaaactttagcgcaataaaaagagcggaaa 1581032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 4968884 - 4968833
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaaaaagtgtctgtctt 120  Q
    |||||||| |||||||||||||||||||| ||| |||| ||||||| |||||    
T  4968884 ataattttcaaacgttagcgcaataaaaaaagcagaaagaagtgtccgtctt 4968833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 108
Target Start/End: Original strand, 9441288 - 9441327
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaaaa 108  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  9441288 ataacttttaaacgttagtgcaataaaaagagcggaaaaa 9441327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 9479731 - 9479776
Alignment:
Q  61 taccgattataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||| |||||||||||||| ||||| |||||||||| ||||||||    
T  9479731 taccgtttataatttttaaatgttagtgcaataaaaatagcggaaa 9479776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 10729292 - 10729255
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||  |||||||||||||||||||||||||||||    
T  10729292 ataatttccaaacgttagcgcaataaaaagagcggaaa 10729255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 11345141 - 11345178
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||||||||  |||||||||||||||||||    
T  11345141 ataatttttaaacgttactgcaataaaaagagcggaaa 11345178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 11842842 - 11842805
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  11842842 ataattttcaaacgttaacgcaataaaaagagcggaaa 11842805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 15470673 - 15470706
Alignment:
Q  73 tttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||| |||||||||||||||||||||||||||||    
T  15470673 ttttcaaacgttagcgcaataaaaagagcggaaa 15470706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 27307662 - 27307629
Alignment:
Q  73 tttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||| |||||||||||||||||||||||||||||    
T  27307662 ttttcaaacgttagcgcaataaaaagagcggaaa 27307629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 34011083 - 34011046
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  34011083 ataattttcaaacgttagtgcaataaaaagagcggaaa 34011046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 37705702 - 37705665
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  37705702 ataattttcaaacgttagcgcaataaaaagagcagaaa 37705665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 44667969 - 44668006
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  44667969 ataatttttaaacgttagtgcaataaaaagaacggaaa 44668006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 48420175 - 48420208
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcg 102  Q
    ||||||||||||||||| ||||||||||||||||    
T  48420175 ataatttttaaacgttaacgcaataaaaagagcg 48420208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 49162923 - 49162960
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  49162923 ataattttcaaacgttagtgcaataaaaagagcggaaa 49162960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 52043580 - 52043621
Alignment:
Q  67 ttataatttttaaacgttagcgcaataaaaagagcggaaaaa 108  Q
    |||||||||| ||||||||||||||||||||||  |||||||    
T  52043580 ttataattttcaaacgttagcgcaataaaaagaatggaaaaa 52043621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 34749026 - 34749062
Alignment:
Q  70 taatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  34749026 taattttcaaacgttagcgcaataaaaagagtggaaa 34749062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 102
Target Start/End: Complemental strand, 34969205 - 34969177
Alignment:
Q  74 ttttaaacgttagcgcaataaaaagagcg 102  Q
    |||||||||||||||||||||||||||||    
T  34969205 ttttaaacgttagcgcaataaaaagagcg 34969177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 36421275 - 36421311
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaa 105  Q
    |||||||||||||  ||||||||||||||||||||||    
T  36421275 ataatttttaaactgtagcgcaataaaaagagcggaa 36421311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 44648438 - 44648474
Alignment:
Q  70 taatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  44648438 taattttcaaacgttagcacaataaaaagagcggaaa 44648474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 8297 - 8260
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||||||||||| |||||||||||||||||    
T  8297 ataatttttaaacgttagcgtaataaaaagagcggaaa 8260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 5918840 - 5918877
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||||||||||    
T  5918840 ataattttcaaacgttagcgcaataaaaagagcggaaa 5918877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 24688826 - 24688863
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  24688826 ataatttttaaacgttagcgcgataaaaagagcggaaa 24688863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 38804526 - 38804489
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||||||||||    
T  38804526 ataattttcaaacgttagcgcaataaaaagagcggaaa 38804489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 11938015 - 11938050
Alignment:
Q  67 ttataatttttaaacgttagcgcaataaaaagagcg 102  Q
    |||||||||| |||||||||||||||||||||||||    
T  11938015 ttataattttcaaacgttagcgcaataaaaagagcg 11938050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 28205635 - 28205674
Alignment:
Q  67 ttataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  28205635 ttataattttgaaacgttatcgcaataaaaagagcggaaa 28205674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 1759510 - 1759476
Alignment:
Q  70 taatttttaaacgttagcgcaataaaaagagcgga 104  Q
    ||||||| |||||||||||||||||||||||||||    
T  1759510 taattttcaaacgttagcgcaataaaaagagcgga 1759476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 99
Target Start/End: Complemental strand, 33192401 - 33192371
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaaga 99  Q
    |||||||||||||||||||||||||||||||    
T  33192401 ataatttttaaacgttagcgcaataaaaaga 33192371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 3825401 - 3825438
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  3825401 ataatttttaaacgttaacgcaataaaaagaacggaaa 3825438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 13150149 - 13150186
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  13150149 ataattttcaaacgttaacgcaataaaaagagcggaaa 13150186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 15916965 - 15916928
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  15916965 ataattttcaaacgttagcggaataaaaagagcggaaa 15916928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 15837367 - 15837335
Alignment:
Q  67 ttataatttttaaacgttagcgcaataaaaaga 99  Q
    |||||||||| ||||||||||||||||||||||    
T  15837367 ttataattttcaaacgttagcgcaataaaaaga 15837335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 34968163 - 34968207
Alignment:
Q  62 accgattataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||| |||||||||| |||| |||| |||||||||||||||||||    
T  34968163 accgtttataattttcaaacattagtgcaataaaaagagcggaaa 34968207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 15647000 - 15646963
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||||||||||    
T  15647000 ataattttcaaacgttagcgcaataaaaagagcggaaa 15646963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 21766069 - 21766032
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||||||||||    
T  21766069 ataattttcaaacgttagcgcaataaaaagagcggaaa 21766032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 39435174 - 39435211
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||||||||||    
T  39435174 ataattttcaaacgttagcgcaataaaaagagcggaaa 39435211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 47741591 - 47741632
Alignment:
Q  66 attataatttttaaacgttagcgcaataaaaagagcggaaaa 107  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  47741591 attataatttttaaacgttagtgcaataaaaagaacggaaaa 47741632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 47901935 - 47901972
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||| |||||||||||||||||||||||||    
T  47901935 ataatttttaaatgttagcgcaataaaaagagcggaaa 47901972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 1303284 - 1303245
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaaaa 108  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  1303284 ataattttcaaacgtcagcgcaataaaaagagcggaaaaa 1303245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 46759469 - 46759435
Alignment:
Q  72 atttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||| |||||||||||||||||||||||||||||    
T  46759469 attttcaaacgttagcgcaataaaaagagcggaaa 46759435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 581640 - 581603
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  581640 ataattttcaaacgttagcgcaataaaaaaagcggaaa 581603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 2474923 - 2474886
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  2474923 ataattttcaaacgttagcgcagtaaaaagagcggaaa 2474886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 5800451 - 5800488
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  5800451 ataattttcaaacattagcgcaataaaaagagcggaaa 5800488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 10199520 - 10199483
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  10199520 ataattttcaaactttagcgcaataaaaagagcggaaa 10199483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 19371930 - 19371967
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  19371930 ataattttgaaacgttggcgcaataaaaagagcggaaa 19371967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 20692007 - 20691970
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  20692007 ataattttgaaacgttagcgtaataaaaagagcggaaa 20691970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 20697485 - 20697448
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  20697485 ataattttgaaacgttagcgtaataaaaagagcggaaa 20697448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 25617449 - 25617482
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcg 102  Q
    |||||||| |||||||||||||||||||||||||    
T  25617449 ataattttcaaacgttagcgcaataaaaagagcg 25617482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 41383813 - 41383769
Alignment:
Q  62 accgattataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||| |||||||||||||| |||  ||||||||||||||||||||    
T  41383813 accgtttataatttttaaatgtttacgcaataaaaagagcggaaa 41383769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 32531320 - 32531357
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||||||||||    
T  32531320 ataattttcaaacgttagcgcaataaaaagagcggaaa 32531357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 8233397 - 8233436
Alignment:
Q  67 ttataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  8233397 ttataatttttaaacattaacgcaataaaaagagcggaaa 8233436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 17353310 - 17353360
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaaaaagtgtctgtctt 120  Q
    |||||||| |||||||||| |||||||| ||||||||| |||||||||||||    
T  17353310 ataattttaaaacgttagcacaataaaa-gagcggaaagaagtgtctgtctt 17353360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 108
Target Start/End: Original strand, 24062813 - 24062852
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaaaa 108  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  24062813 ataattttcaaacgtcagcgcaataaaaagagcggaaaaa 24062852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 6874993 - 6874963
Alignment:
Q  70 taatttttaaacgttagcgcaataaaaagag 100  Q
    |||||||||||||||||||||||||||||||    
T  6874993 taatttttaaacgttagcgcaataaaaagag 6874963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 10460312 - 10460346
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcgg 103  Q
    |||| ||||||||||||||||||||||||||||||    
T  10460312 ataaattttaaacgttagcgcaataaaaagagcgg 10460346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 1212059 - 1212096
Alignment:
Q  72 atttttaaacgttagcgcaataaaaagagcggaaaaaa 109  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  1212059 attttcaaacgttagcgcaataaaaagagcgaaaaaaa 1212096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 34209926 - 34209889
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  34209926 ataatttttaaacgtttgcgcaataaaaatagcggaaa 34209889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 22535346 - 22535310
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaa 105  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  22535346 ataatttttaaatgttagagcaataaaaagagcggaa 22535310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 936327 - 936364
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||||||||||    
T  936327 ataattttcaaacgttagcgcaataaaaagagcggaaa 936364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 9524095 - 9524132
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||||||||||||||||||||||||    
T  9524095 ataattttcaaacgttagcgcaataaaaagagcggaaa 9524132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 12083208 - 12083245
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||| |||||||||||||||||||||||||    
T  12083208 ataatttttaaatgttagcgcaataaaaagagcggaaa 12083245  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 24836953 - 24836990
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||| |||||||||||||||||||||||||    
T  24836953 ataatttttaaaagttagcgcaataaaaagagcggaaa 24836990  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 36700951 - 36700990
Alignment:
Q  67 ttataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  36700951 ttataatttttaaacattagcgcaataaaaagggcggaaa 36700990  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 35272226 - 35272264
Alignment:
Q  64 cgattataatttttaaacgttagcgcaataaaaagagcg 102  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  35272226 cgatcataattttcaaacgttagcgcaataaaaagagcg 35272264  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 834067 - 834030
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  834067 ataattttcaaacgttaacgcaataaaaagagcggaaa 834030  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 6062199 - 6062236
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6062199 ataatttttaaacgttagcgtaataaaaaaagcggaaa 6062236  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 14000671 - 14000708
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  14000671 ataattttcaaacgttaacgcaataaaaagagcggaaa 14000708  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 16313455 - 16313488
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcg 102  Q
    |||||||| |||||||||||||||||||||||||    
T  16313455 ataattttcaaacgttagcgcaataaaaagagcg 16313488  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 28867452 - 28867415
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  28867452 ataattttcaaaggttagcgcaataaaaagagcggaaa 28867415  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 39956013 - 39956050
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  39956013 ataattttcaaatgttagcgcaataaaaagagcggaaa 39956050  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 3295810 - 3295846
Alignment:
Q  70 taatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  3295810 taattttcaaacgttagcacaataaaaagagcggaaa 3295846  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 20176353 - 20176321
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagc 101  Q
    |||||||||||||||||| ||||||||||||||    
T  20176353 ataatttttaaacgttagggcaataaaaagagc 20176321  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 23270849 - 23270893
Alignment:
Q  62 accgattataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||| |||||||||| |||| ||| ||||||||||||||||||||    
T  23270849 accgtttataattttcaaactttaacgcaataaaaagagcggaaa 23270893  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 106
Target Start/End: Complemental strand, 39191264 - 39191236
Alignment:
Q  78 aaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||||||||||||||||||||||||    
T  39191264 aaacgttagcgcaataaaaagagcggaaa 39191236  T

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Target: scaffold0268 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 21411 - 21448
Alignment:
Q  69 ataatttttaaacgttagcgcaataaaaagagcggaaa 106  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  21411 ataattttcaaactttagcgcaataaaaagagcggaaa 21448  T

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Target: scaffold0229 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 13221 - 13258
Alignment:
Q  72 atttttaaacgttagcgcaataaaaagagcggaaaaaa 109  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  13221 attttcaaacgttagcgcaataaaaagagcgaaaaaaa 13258  T

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