View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_519 (Length: 240)
Name: NF10145A_low_519
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_519 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0068 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 33347861 - 33347635
Alignment:
| Q |
14 |
gatggacatcataatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttactt |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33347861 |
gatgcacatcataatccaatttatccatctatcagaaaaacccatttttatcataacctttttcagataactccaatcaattatgtcatacgctttactt |
33347762 |
T |
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| Q |
114 |
atatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccataacattatctaggacagctc |
213 |
Q |
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|| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || |
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| T |
33347761 |
atgtcaagcttaagagcaacatctcccaatgtacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggatagatc |
33347662 |
T |
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| Q |
214 |
gatctgcatcaaatgcagattgactat |
240 |
Q |
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|| | | | |||||||||||||||||| |
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| T |
33347661 |
gacccggaacaaatgcagattgactat |
33347635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 26383521 - 26383747
Alignment:
| Q |
14 |
gatggacatcataatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttactt |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26383521 |
gatgcacatcataatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattctgtcatacgctttactt |
26383620 |
T |
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| Q |
114 |
atatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccataacattatctaggacagctc |
213 |
Q |
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| T |
26383621 |
atatcaagcttaagagaaacatctcccaatgtaactttgagtttcgacttcatataatgaatgatctctatggctgccatagcattatctaggatagatc |
26383720 |
T |
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| Q |
214 |
gatctgcatcaaatgcagattgactat |
240 |
Q |
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| T |
26383721 |
gacccggaacaaatgcaaattgactat |
26383747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 39530135 - 39530084
Alignment:
| Q |
19 |
acatcataatccaatttatccatctatcagaaaaacccatttttatcataac |
70 |
Q |
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||||||| ||||||| ||||||||||| ||| ||||||||||| |||||||| |
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| T |
39530135 |
acatcatgatccaatctatccatctattagagaaacccattttaatcataac |
39530084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 19111951 - 19112169
Alignment:
| Q |
22 |
tcataatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttacttatatccag |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| || |
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| T |
19111951 |
tcataatccaatttatccatctatcagaaaaacccatttttatcataacccttttcaaataactccaatcaattatgtcatacgttttacttatatcaag |
19112050 |
T |
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| Q |
122 |
cttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccataacattatctaggacagctcgatctgca |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| || |||| | | | |
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| T |
19112051 |
cttaagagcaacatctcccaatatacctttgactttcgactccatataatgaatgatctctatggcttccatagcattatctaggatagatcgacccgga |
19112150 |
T |
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| Q |
222 |
tcaaatgcagattgactat |
240 |
Q |
| |
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|||||||||||||||||| |
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| T |
19112151 |
acaaatgcagattgactat |
19112169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 97 - 202
Target Start/End: Complemental strand, 48211307 - 48211202
Alignment:
| Q |
97 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccataac |
196 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| |||||||| |||||||||||| ||||| |||||||| |
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| T |
48211307 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatatgatgaatgatctcaatggcagccataac |
48211208 |
T |
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| Q |
197 |
attatc |
202 |
Q |
| |
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|||||| |
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| T |
48211207 |
attatc |
48211202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 46390140 - 46390244
Alignment:
| Q |
97 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccataac |
196 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| |||||||| |||||||||||| ||||| ||||||| |
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| T |
46390140 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatatgatgaatgatctcaatggcaaccataac |
46390239 |
T |
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| Q |
197 |
attat |
201 |
Q |
| |
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||||| |
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| T |
46390240 |
attat |
46390244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 11762 - 11867
Alignment:
| Q |
97 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccataac |
196 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| ||||||| || ||||||||| ||||| ||||| | |
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| T |
11762 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatacgattaatgatctcaatggcaaccatagc |
11861 |
T |
|
| Q |
197 |
attatc |
202 |
Q |
| |
|
|||||| |
|
|
| T |
11862 |
attatc |
11867 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 202
Target Start/End: Complemental strand, 21702148 - 21702043
Alignment:
| Q |
97 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccataac |
196 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| ||||||| || ||||||||| ||||| ||||| | |
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| T |
21702148 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatacgattaatgatctcaatggcaaccatagc |
21702049 |
T |
|
| Q |
197 |
attatc |
202 |
Q |
| |
|
|||||| |
|
|
| T |
21702048 |
attatc |
21702043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 202
Target Start/End: Original strand, 23266603 - 23266720
Alignment:
| Q |
85 |
tccaatcaattttgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctat |
184 |
Q |
| |
|
|||| |||||||||||||| ||||| || ||||| || || ||||| || ||||| | || | ||||||||||||||||||| ||| || || ||||| |
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|
| T |
23266603 |
tccactcaattttgtcatatgctttgctaatatcaagtttcagagccacttctccaacgttatccttgactttcgacttcatatgatgtattatttctat |
23266702 |
T |
|
| Q |
185 |
ggctgccataacattatc |
202 |
Q |
| |
|
|| |||||||||||||| |
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| T |
23266703 |
agcagccataacattatc |
23266720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 5613176 - 5613214
Alignment:
| Q |
86 |
ccaatcaattttgtcatacgctttacttatatccagctt |
124 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| |
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|
| T |
5613176 |
ccaatcaattctatcatacgctttacttatatccagctt |
5613214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 22907946 - 22907829
Alignment:
| Q |
19 |
acatcataatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttacttatatc |
118 |
Q |
| |
|
||||||||||||| || | |||| ||||||||| ||||| | | ||||||||| | ||||||||||||||||| ||||||| ||||| || ||||| |
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|
| T |
22907946 |
acatcataatccatttaacccattgatcagaaaaccccatctctgtcataacccctcgaagataactccaatcaatcctgtcataagctttgctaatatc |
22907847 |
T |
|
| Q |
119 |
cagcttaagagcaacatc |
136 |
Q |
| |
|
|| || | ||||||||| |
|
|
| T |
22907846 |
aagttttaaagcaacatc |
22907829 |
T |
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