View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_520 (Length: 240)

Name: NF10145A_low_520
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_520
NF10145A_low_520
[»] chr4 (1 HSPs)
chr4 (1-202)||(49159232-49159429)


Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 49159232 - 49159429
Alignment:
Q  1 aattcttgctcaaatcttcatcttatcatccaagcccgtttggcccaaaatcataaataccaaaagtctattattctgtccgttcagacattttctttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||| ||  |||||     ||| ||||||| |    
T  49159232 aattcttgctcaaatcttcatcttatcatccaagcccgtttggcccaaaatcataaataccaaagacccattgtttagtccg-----acactttctttta 49159326  T
Q  101 acactcattttattatcggatgaatatgatattcaaataggcattgccatttaaaaaataatgt-tttatccatgtggatttatgagatttatataatgg 199  Q
    || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  49159327 acgctcattttattattggatgaatatgatattcaaataggcattgccatttaaaaaataatgtccttatccatgtggatttatgagatttatataatgg 49159426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University