View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_521 (Length: 240)
Name: NF10145A_low_521
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_521 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 53971279 - 53971052
Alignment:
| Q |
1 |
tcaacatcttaccattcatcaggtatgatactatgattaggataatttgatgatttaatttaatttggtaaatatacctctacatgtcttagtcttacta |
100 |
Q |
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| T |
53971279 |
tcaacatcttaccattcatcaggtatgatactatgattaggataatttgatgatttaatttaatttggtaaatatacctctacatgtctta------cta |
53971186 |
T |
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| Q |
101 |
ccccctccgtcttattgtaggagatggaggatggaatttatgagggcaattggcaggacccacaaaatgttccgacatgtatttcatctcagctaagaac |
200 |
Q |
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| T |
53971185 |
ccccctccgtcttattgtaggagatggaggatggaatttatgaggacaattggcaggacccacaaaatgttccgacatgtatttcatctcagctaagaac |
53971086 |
T |
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| Q |
201 |
ttgtttgtttaaagactgtaaaggaaggaagagt |
234 |
Q |
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| T |
53971085 |
ttgtttgtttaaagactgtaaaggaaggaagagt |
53971052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 53984985 - 53984757
Alignment:
| Q |
1 |
tcaacatcttaccattcatcaggtatgatactatgattaggataatttgatgatttaatttaatttggtaaatatacctctacatgtcttagtcttacta |
100 |
Q |
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|||||||||||||||||||||||| | | | |||||| |||||||||||| |||||||||||||||||||||| |||||||||| |||||| | |
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| T |
53984985 |
tcaacatcttaccattcatcaggtttaaga-tatgataaggataatttgacgatttaatttaatttggtaaatctacctctacacac----gtcttaatg |
53984891 |
T |
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| Q |
101 |
ccccctccgtcttattgtaggagatggaggatggaatttatgagggcaattggcaggacccacaaaatgttccgacatgtatttcatctcagctaagaac |
200 |
Q |
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| T |
53984890 |
ctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaaatattccgacgtgcatttcatctcagttaagaac |
53984791 |
T |
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| Q |
201 |
ttgtttgtttaaagactgtaaaggaaggaagagt |
234 |
Q |
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| T |
53984790 |
ttgtttgtttaaaggttgtaaaggcatgaagagt |
53984757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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