View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_522 (Length: 240)
Name: NF10145A_low_522
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_522 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 47584080 - 47583878
Alignment:
| Q |
20 |
gaatcttgttgaaacctatgaaaggttctcggagaaatggcgattgattattagaagagtaacatgcacgtgtgcaggcagtgaatcattctactgtgtg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47584080 |
gaatcttgttgaaacctatgaaaggttctcggagaaatggcgattgattattagaagagtaacatgcacgtgtgcaggcagtgaatcattctagtgtgtg |
47583981 |
T |
|
| Q |
120 |
ctcttggagtggagccatttgtaagtctagggaaactaccaaaaggcttagcgttgatttggcacacctttttgtggtcaatatagaatgctagaaatga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47583980 |
ctcttggagtggagccatttgtaagtctagggaaactaccaaaaggcttagcgttgatttggcacaccattttgtggtcaatatagaatgctagaaatga |
47583881 |
T |
|
| Q |
220 |
cat |
222 |
Q |
| |
|
||| |
|
|
| T |
47583880 |
cat |
47583878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University