View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_524 (Length: 239)
Name: NF10145A_low_524
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_524 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 1875076 - 1875284
Alignment:
| Q |
14 |
acgagccactaaaaaagataagtctcataataagaaaggatcagaagaatatggtgatggccaaacagctataccttctctttcaatttccactacatag |
113 |
Q |
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| T |
1875076 |
acgagccactaaaaaagataagtctcataataagaaaggatcagaagaatatggtgatggccaaacagctataccttctctttcaatttccactacatag |
1875175 |
T |
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| Q |
114 |
cgccttaccattggannnnnnngataatgatcaaggttctctaaatgaaaatcctctcatgacgtttaactttagcgagtatcgaccgccgtcggaacca |
213 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1875176 |
cgccttaccattggatttttttgataatgatcaaggttctctaaatgaaaatcctctcatgacgtttaactttagcgagtatcgaccgccgtcggaacca |
1875275 |
T |
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| Q |
214 |
cctgatgtc |
222 |
Q |
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||||||||| |
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| T |
1875276 |
cctgatgtc |
1875284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 44 - 197
Target Start/End: Original strand, 1885363 - 1885515
Alignment:
| Q |
44 |
taagaaaggatcagaagaatatggtgatggccaaacagctataccttctctttcaatttccactacatagcgccttaccattggannnnnnngataatga |
143 |
Q |
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||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||||| |||||| ||||||| |
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| T |
1885363 |
taagaaatgatcagaagaatatggtgatagccaaacagccataccttctctttcaatttccactacagagtgccttacaattggatattttt-ataatga |
1885461 |
T |
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| Q |
144 |
tcaaggttctctaaatgaaaatcctctcatgacgtttaactttagcgagtatcg |
197 |
Q |
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| T |
1885462 |
tcaaggttctctaaatgacaatcctttcgtgacgtttaacattagtgattatcg |
1885515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 1884197 - 1884232
Alignment:
| Q |
14 |
acgagccactaaaaaagataagtctcataataagaaa |
50 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
1884197 |
acgagccactaaaaaa-ataagtctcataataagaaa |
1884232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 3417862 - 3417914
Alignment:
| Q |
14 |
acgagccactaaaaaagataagtctcataataagaaaggatcagaagaatatg |
66 |
Q |
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|||||| ||||||||||| || |||||| ||| ||||||||||||||||||| |
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| T |
3417862 |
acgagcaactaaaaaagagaaatctcatcatagaaaaggatcagaagaatatg |
3417914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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