View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_53 (Length: 420)
Name: NF10145A_low_53
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 39718042 - 39718454
Alignment:
| Q |
1 |
tcaaaagaatcacatagcgcccgccaaatagcatctccatgaagcttccaagcttctggaagaaaccaaaaagaactattaggtattagcagnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39718042 |
tcaaaagaatcacatagcgcccgccaaatagcatctccatgaagcttccaagcttctggaagaaaccaaaaagaactattagatattagcagaaaaaaga |
39718141 |
T |
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| Q |
101 |
nnnnnnnnngtaaagggtattgtaagtctctgaaccacttcgacgtactataatagatatatttcactaacattccaattttgaagatacttaggcctca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39718142 |
aaaagaaaagtaaagggtattgtaagtctctgaaccacttcgacgtactataatagatatatttcactaacattccaattttgaagatacttaggcctca |
39718241 |
T |
|
| Q |
201 |
aaaaagataaacactgaatcatgctaaatactgaatgctcggtagctaacaataaagagcttagttgacaaatctttgaacatcaaccatggtgacccta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39718242 |
aaaaagataaacactgaatcatgctaaatactgaatgctcggtagctaacaataaagagcttagttgacaaatctttgaacatcaaccatggtgacccta |
39718341 |
T |
|
| Q |
301 |
cttaaagttagaaataaaaggaagaatgttcaagtttgacaaatctcaaatgatgctttaattaatccaggatggagcataacatatgacacatgacctg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39718342 |
cttaaagttagaaataaaaggaagaatgttcaagtttgacaaatctcaaatgatgttttaattaatccaggatggagcataacatatgacaaatgacctg |
39718441 |
T |
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| Q |
401 |
tacatattcttgg |
413 |
Q |
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|||||||| |||| |
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| T |
39718442 |
tacatatttttgg |
39718454 |
T |
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Back To:
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22549968 - 22549920
Alignment:
| Q |
1 |
tcaaaagaatcacatagcgcccgccaaatagcatctccatgaagcttcc |
49 |
Q |
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||||||||| |||||||||||| ||||||| ||||||||| |||||||| |
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| T |
22549968 |
tcaaaagaagcacatagcgcccaccaaataacatctccataaagcttcc |
22549920 |
T |
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