View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_531 (Length: 238)
Name: NF10145A_low_531
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_531 |
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| [»] chr5 (3 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 24049444 - 24049680
Alignment:
| Q |
1 |
ggctgatatgctgatgttgatctcaaagcaataaacatacacagttctaaggccattttaacttaaattaatttaatcatattcnnnnnnnnnaggccat |
100 |
Q |
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| T |
24049444 |
ggctgatatgctgatgttgatctcaaagcaataaacatacaca-ttctaagaccattctaacttaaattaatttaatcatattctttttttttaggccat |
24049542 |
T |
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| Q |
101 |
tcttgttgtctttactagtaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatttctatttgg |
200 |
Q |
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| T |
24049543 |
tcttgttgtctttacttaaaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatttctatttgg |
24049642 |
T |
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| Q |
201 |
tagtttgtatagactgactcattcaaccgttctcattt |
238 |
Q |
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| T |
24049643 |
tagtttgtatagactgactcattcaaccgttctcattt |
24049680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 24052580 - 24052816
Alignment:
| Q |
1 |
ggctgatatgctgatgttgatctcaaagcaataaacatacacagttctaaggccattttaacttaaattaatttaatcatattcnnnnnnnnnaggccat |
100 |
Q |
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| T |
24052580 |
ggctgatatgctgatgttgatcacaaagcaagaaacatacaca-ttctaagaccattctaacttaaattaatttaatcatattctttttttttaggccat |
24052678 |
T |
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| Q |
101 |
tcttgttgtctttactagtaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatttctatttgg |
200 |
Q |
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| T |
24052679 |
tcttgttgtctttacttaaaaactttgatgccttggaccaaatgtcaaacaagattagaataagagtagatcataaaagatcatatgcatttctatttgg |
24052778 |
T |
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| Q |
201 |
tagtttgtatagactgactcattcaaccgttctcattt |
238 |
Q |
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| T |
24052779 |
tagtttgtatagactgactcattcaaccgttctcattt |
24052816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 24102163 - 24102203
Alignment:
| Q |
15 |
tgttgatctcaaagcaataaacatacacagttctaaggcca |
55 |
Q |
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| T |
24102163 |
tgttgaactcaaagcaagaaacatacaaagttctaaggcca |
24102203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 124 - 238
Target Start/End: Complemental strand, 4261422 - 4261308
Alignment:
| Q |
124 |
tttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatttctatttggtagtttgtatagactgactcatt |
223 |
Q |
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| T |
4261422 |
tttgatgccttggaccaaatgacaaagaagaatagaataagagtagatcataaaagatcatatgcttttttatttggtcatttgtgcagattgactcatt |
4261323 |
T |
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| Q |
224 |
caaccgttctcattt |
238 |
Q |
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| T |
4261322 |
caactgttctcattt |
4261308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 4037883 - 4037943
Alignment:
| Q |
131 |
ccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatt |
191 |
Q |
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| T |
4037883 |
cctttgacaaaataacaagcaataatagaatatgagtagatcataaaagatcatatgcatt |
4037943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 4027546 - 4027602
Alignment:
| Q |
122 |
actttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaa |
178 |
Q |
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| T |
4027546 |
actttgatgccttggacaaaatgacagacaaaaatagaataagagtagttcataaaa |
4027602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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